View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_11 (Length: 457)
Name: NF17964_low_11
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 156 - 439
Target Start/End: Complemental strand, 6900709 - 6900426
Alignment:
| Q |
156 |
acgagagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaaca |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6900709 |
acgagagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaaca |
6900610 |
T |
|
| Q |
256 |
ttctcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagcgttgttacggatacggctaagagcata |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6900609 |
ttctcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagcgttgttacggatacggctaagagcata |
6900510 |
T |
|
| Q |
356 |
ttgaaccctccaaagctcccgcttgcagcgaagaccgtactctccgacgagcttcaactcaacatccaaatgttccttctcata |
439 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||| |
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| T |
6900509 |
ttgaaccctccaaagctcgcgcttgcagcgaagaccgtactctccgacgagcttcaactcagcatctaaacgctccttctcata |
6900426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 159 - 441
Target Start/End: Original strand, 44930721 - 44931003
Alignment:
| Q |
159 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
258 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||| || ||||| | |
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| T |
44930721 |
agagtctgaagacgacactcgagaaaattctcaacagtgagagccaagacataatcgagcttgttctgagtttcatcaagcaagccatgcttaaacatcc |
44930820 |
T |
|
| Q |
259 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagcgttgttacggatacggctaagagcatattg |
358 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| |
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| T |
44930821 |
tcctcaaaagagcttcaccctcgaagatccgacgagggttcttttcatccagtgtcaaaagtgttctagcattgttacggatacggctaagagcgtattg |
44930920 |
T |
|
| Q |
359 |
aaccctccaaagctcccgcttgcagcgaagaccgtactctccgacgagcttcaactcaacatccaaatgttccttctcatatg |
441 |
Q |
| |
|
||||||||| ||||| | ||| ||||||||||| |||||||||||||||||||||||| |||||||| | |||||||| |||| |
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| T |
44930921 |
aaccctccacagctctctcttacagcgaagaccatactctccgacgagcttcaactcagcatccaaacgctccttctcgtatg |
44931003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 6909021 - 6909175
Alignment:
| Q |
1 |
aaaggaaacaagcaaatacttctaatcctgtaactctaggaggatacaaacaatagatcaatagacattgcaaaataatacatttataagcacaagacac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6909021 |
aaaggaaacaagcaaagacttctaatcatgtaactctaggaggatacaaacaatagatcaatagacattgcaaaataatacatttataagcacaagacac |
6909120 |
T |
|
| Q |
101 |
agatagcgtgcaaactaaagaacaatgcaaccaatgatctaactaagatctgcat |
155 |
Q |
| |
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| |||| |||||||| ||| ||||||||||||||||||||||||| ||||||||| |
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| T |
6909121 |
atatagtgtgcaaacgaaacaacaatgcaaccaatgatctaactatgatctgcat |
6909175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 44925409 - 44925477
Alignment:
| Q |
1 |
aaaggaaacaagcaaatacttctaatcctgtaactctaggaggatacaaacaatagatcaatagacatt |
69 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44925409 |
aaaggaaacaagcaaagacttctaatcctgtaactctaggaggatacaaacaatagatcaatagacatt |
44925477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 44925847 - 44925909
Alignment:
| Q |
68 |
ttgcaaaataatacatttataagcacaagacacagatagcgtgcaaactaaagaacaatgcaa |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
44925847 |
ttgcaaaataatacatttataagcacaagacacagatagcgtggaaactaaacaacaatgcaa |
44925909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 159 - 441
Target Start/End: Original strand, 207937 - 208219
Alignment:
| Q |
159 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
207937 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
208036 |
T |
|
| Q |
259 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagcgttgttacggatacggctaagagcatattg |
358 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
208037 |
tcctcaaaagtgcttcaccttcaaagatccgacgagggttcttctcatccagtgtcaaaagtgtcctagcattgttacggatacggctaagagcatattg |
208136 |
T |
|
| Q |
359 |
aaccctccaaagctcccgcttgcagcgaagaccgtactctccgacgagcttcaactcaacatccaaatgttccttctcatatg |
441 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
208137 |
aaccctccaaagctcgcgcttgcagcgaagaccgtactctccgacgagcttcaactcagcatccaaacgttccttctcatatg |
208219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 159 - 439
Target Start/End: Complemental strand, 201307 - 201027
Alignment:
| Q |
159 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
201307 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
201208 |
T |
|
| Q |
259 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagcgttgttacggatacggctaagagcatattg |
358 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
201207 |
tcctcaaaagtgcttcaccttcaaagatccgacgagggttcttctcatccagtgtcaaaagtgtcctagcattgttacggatacggctaagagcatattg |
201108 |
T |
|
| Q |
359 |
aaccctccaaagctcccgcttgcagcgaagaccgtactctccgacgagcttcaactcaacatccaaatgttccttctcata |
439 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||| |
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|
| T |
201107 |
aaccctccaaagctcgcgcttgcagcgaagaccgtactctccgacgagcttcaactcagcatctaaacgctccttctcata |
201027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 201966 - 201812
Alignment:
| Q |
1 |
aaaggaaacaagcaaatacttctaatcctgtaactctaggaggatacaaacaatagatcaatagacattgcaaaataatacatttataagcacaagacac |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
201966 |
aaaggaaacaagcaaagacttctaatcctgtaactctaggaggatacaaacaattgatcaatagacattgcaaaataatacatttataagcacaagacac |
201867 |
T |
|
| Q |
101 |
agatagcgtgcaaactaaagaacaatgcaaccaatgatctaactaagatctgcat |
155 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
201866 |
agatagcgtgcaaactaaacaacaatgcaaccaatgatctaactaagatctgcat |
201812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 159 - 441
Target Start/End: Complemental strand, 24652590 - 24652308
Alignment:
| Q |
159 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24652590 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcaagcttgttttgtgtttcatcaagaagaccatgtttgaacattc |
24652491 |
T |
|
| Q |
259 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagcgttgttacggatacggctaagagcatattg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24652490 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagtgtcctagaattgttacggatacggctaagagcatattg |
24652391 |
T |
|
| Q |
359 |
aaccctccaaagctcccgcttgcagcgaagaccgtactctccgacgagcttcaactcaacatccaaatgttccttctcatatg |
441 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| ||| | ||||||||||||| |
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|
| T |
24652390 |
aaccctccaaagctcgcgcttgcagcgaagaccgtactctcggacgagcttcaactcagcatctaaacgctccttctcatatg |
24652308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 162 - 441
Target Start/End: Complemental strand, 29513888 - 29513609
Alignment:
| Q |
162 |
gtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcc |
261 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| || | |
|
|
| T |
29513888 |
gtctgaagacggcgttcaagaaaattctcaacagtgagagccaagacataatcgagtttgttctgagtttcatcaagaagaccatgcttaaacatccttc |
29513789 |
T |
|
| Q |
262 |
tcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagcgttgttacggatacggctaagagcatattgaac |
361 |
Q |
| |
|
|||| || ||||||||||||||||| |||||||||||||||||||||| ||||| || |||| || ||||||||||||||||| | ||| || ||||| |
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|
| T |
29513788 |
tcaacagcgcttcaccctcaaagatacgacgaggattcttctcatccaaggtcaacagattccttgcattgttacggatacggctcaaagcgtactgaac |
29513689 |
T |
|
| Q |
362 |
cctccaaagctcccgcttgcagcgaagaccgtactctccgacgagcttcaactcaacatccaaatgttccttctcatatg |
441 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||||||| || ||||||||| ||||||| | |||||||| |||| |
|
|
| T |
29513688 |
cctccaaagctccctcttgcacctaagaccgtactctccgaccagtttcaactcagcatccaatcgctccttctcgtatg |
29513609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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