View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_13 (Length: 427)
Name: NF17964_low_13
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 164 - 407
Target Start/End: Original strand, 27065002 - 27065256
Alignment:
| Q |
164 |
attaggaactcatatgtaacacacttgcataagagaaagtcatagtgtctctttggaagtttgacga-----------taacgtgtgattttgttgaagt |
252 |
Q |
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| T |
27065002 |
attaggaacttatatgtaacacacttgcataagagaaagtcatagcgtgtgtttggaagtttgacgaaatgatgactataacgtgtgattttgttgaagt |
27065101 |
T |
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| Q |
253 |
taaacaaatgtaatcaaaattatagcgacacattatannnnnnnnggactcacattcaatccaaacatgcacacattaagttgataaataatacataata |
352 |
Q |
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| T |
27065102 |
taaacaaatgtaatcaaaattacagcgacacattatatttttttgggactcacattcaatccaaacatgcacacattaagttgataaataatacatagta |
27065201 |
T |
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| Q |
353 |
cattttcttgaaaccgaaaaaccatttatttctaaacatggaaacaaaaaactac |
407 |
Q |
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| T |
27065202 |
cattttcttgaaacggaaaaaccatttatttctaaacatagaaacaaaaaactac |
27065256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 27059816 - 27059901
Alignment:
| Q |
86 |
ttgtggatattatggaggtgttagatctttgttaaacaaaatggggcgtcataaacctcttcggtgttttgggttggaattaggaa |
171 |
Q |
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| T |
27059816 |
ttgtggatattctggaggtattagaactgtgttaaacaaaatggggcgtcataaacgtcttcggtgttttgggttggaattaggaa |
27059901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 32329665 - 32329717
Alignment:
| Q |
17 |
tttattatgacaagtgggagggtgtaggagaggggtataccacgtaagggtgt |
69 |
Q |
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| T |
32329665 |
tttattgtgacaagtgggagggtgtatgagaggggtacaccatgtaagggtgt |
32329717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 44682421 - 44682496
Alignment:
| Q |
11 |
ttatactttattatgacaagtgggagggtgtaggagaggggtataccacgtaagggtgtttacctatcaactctct |
86 |
Q |
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| T |
44682421 |
ttatattttattgtgacaagtgggagggtgtaagagaggggtacaccacgtaagggtgtttacctatcagctctct |
44682496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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