View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_15 (Length: 392)
Name: NF17964_low_15
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 3150469 - 3150843
Alignment:
| Q |
1 |
accaacctatatcacatgtttcacatcactattaactagtgctaaatatttcaacaaactttattatatattaatgtagtattaaaaaatgtactactat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3150469 |
accaacctatatcacatgtttcacatcactattaactagtgctaaatatttcaacaaactttattatatattaatgtagtattaaaaaatgtactactat |
3150568 |
T |
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| Q |
101 |
ataataatagcaattgaatggaatattgtagaaaaacagagtgtaccttcaagtacataaaatcttcctagaaatgcttaccatgttgtccttcaaaagc |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3150569 |
ataataatagcaattgagtggaatattgtagaaaaacagagtgtaccttcaagtacataaaatcttcctagaaatgcttaccatgttgtccttcaaaagc |
3150668 |
T |
|
| Q |
201 |
cgccactttaagagtcaagacaaaattacaaaagcagtggaaaaggcacgtcacatatacatatacatgtgtctttgtatatctatatattttggnnnnn |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3150669 |
cgccactttaagagtcaagacaaaattataaaagcagtggaaaaggcacgtcacatatacatatacatgtgtctttgtatatctatatattttggaaaaa |
3150768 |
T |
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| Q |
301 |
nnnnnnnnnnncagaggaagtgctctgttttctctgnnnnnnngtatgatataagagatattcacataaagccta |
375 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3150769 |
gaaaagaaaaacagaggaagtgctctgttttctctgtttttttgtatgatataagagatattcacataaagccta |
3150843 |
T |
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