View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_16 (Length: 377)
Name: NF17964_low_16
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 16015627 - 16015974
Alignment:
| Q |
13 |
aatatcgcatgtggcgcaaattttacaacttgtatatgcatacataagtgggtttcagggaatgatcaatcggtttgctccggttgtagacagccatttg |
112 |
Q |
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| T |
16015627 |
aatatcgcatgtggcgcaaattttacaacttgtatatgcatacataagtgggtttcagggaatgatcaatcggtttgctccggttgtagacagccatttg |
16015726 |
T |
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| Q |
113 |
gttttactagaaaaaggcataattgttatcattgtggattggtgtattgccatccttgtagttcaaaaaaggcgctgaaagcagcattggctccaacgcc |
212 |
Q |
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| T |
16015727 |
gttttactagaaaaaggcataattgttatcattgtggattggtgtattgccatccttgtagttcaaaaaaggcgctgaaagcagcattggctccaacgcc |
16015826 |
T |
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| Q |
213 |
tagcaaaccgcatcgtgtttgtgatgcttgttatgctaaacttaaaagttgcgagaatagtaatgcttcccatttcaataaagaaattacccgtccttct |
312 |
Q |
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| T |
16015827 |
tagcaaaccgcatcgtgtttgtgatgcttgttatgctaaacttaaaggttgcgagaatagtaatgcttcccatttcaataaagaaattacccgtccttct |
16015926 |
T |
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| Q |
313 |
agttccgtgtatggaagggaaaaaactgagaggtttgaggtaagacct |
360 |
Q |
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| T |
16015927 |
agttccgtgtatggaagggaaaaaactgagagggttgaggtaagacct |
16015974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 26890545 - 26890426
Alignment:
| Q |
87 |
ttgctccggttgtagacagccatttggttttactagaaaaaggcataattgttatcattgtggattggtgtattgccatccttgtagttcaaaaaaggcg |
186 |
Q |
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| T |
26890545 |
ttgcaccggttgcagacaaccattcggttttactagaaaaaggcataattgttataattgcggattagtgcattgtcatggttgtagttcaagaaaagtt |
26890446 |
T |
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| Q |
187 |
ctgaaagcagcattggctcc |
206 |
Q |
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| T |
26890445 |
atgaaagcagcattggctcc |
26890426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 10161807 - 10161683
Alignment:
| Q |
85 |
gtttgctccggttgtagacagccatttggttttactagaaaaaggcataattgttatcattgtggattggtgtattgccatccttgtagttcaaaaaagg |
184 |
Q |
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||||||| ||||||||||| ||||||||||| || |||| | |||| |||||| || | ||||||||||| | || ||| ||||||||| ||||||| |
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| T |
10161807 |
gtttgctttggttgtagacaaccatttggtttaacaagaatacggcacaattgtaataactgtggattggttttctgtcataattgtagttctaaaaagg |
10161708 |
T |
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| Q |
185 |
cgctgaaagcagcattggctccaac |
209 |
Q |
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| T |
10161707 |
caatcaaagctgcaatggctccaac |
10161683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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