View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_17 (Length: 376)
Name: NF17964_low_17
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 29701673 - 29701316
Alignment:
| Q |
19 |
cttctgggaacacttttttctctgcactgttagaccacaagaacctaactccactatgcttaagtcctaatgctatctctcttatttgagatggaccaaa |
118 |
Q |
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| T |
29701673 |
cttctgggaacacttttttctctgcactgttagaccacaagaacctaaccccactatgcttaagtcctaatgctatctctcttatttgagatggaccaaa |
29701574 |
T |
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| Q |
119 |
gctaactcccatgcttccaaaacatnnnnnnncaactgatttatctggctgctcatctagccatttcaatataagatcatgctgagctttatccaattta |
218 |
Q |
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| T |
29701573 |
gctaactcccatgcttccaaaacataaaaaaacaactgatttatctggctgctcatctagccatttcaatataagatcatgctgagcttgatccaattta |
29701474 |
T |
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| Q |
219 |
gggttaggctgacctttgagatctaacaaaggaccaacagcatagataggagggacttgctcatcatgatcatataatgcatcaatagaagattgttcca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29701473 |
gggttaggctgacctttgagatctaacaaaggaccaacagcatagataggagggattttctcatcatgatcatataatgcatcaatagaagattgttcca |
29701374 |
T |
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| Q |
319 |
aatctgaaaaggtattaacaataatccccttggtgtttctaaacctctcagctagttt |
376 |
Q |
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| T |
29701373 |
aatctgaaaaggtattaacaataatccctttggtgtctctaaacctctcagctagttt |
29701316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 53 - 354
Target Start/End: Complemental strand, 29679179 - 29678878
Alignment:
| Q |
53 |
ccacaagaacctaactccactatgcttaagtcctaatgctatctctcttatttgagatggaccaaagctaactcccatgcttccaaaacatnnnnnnnca |
152 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29679179 |
ccacaaaaacctaactccactatgcttaagtcccaatgctatttctcttatttgagatggaccaaagctaactcccatgcttccaaaacatagaaaaaca |
29679080 |
T |
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| Q |
153 |
actgatttatctggctgctcatctagccatttcaatataagatcatgctgagctttatccaatttagggttaggctgacctttgagatctaacaaaggac |
252 |
Q |
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| T |
29679079 |
actgatttatttggctgcttatctagccatctcaatataagatcaagttgagattgatctaacttagggttaggttgacctttaagatctaacaaaggac |
29678980 |
T |
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| Q |
253 |
caacagcatagataggagggacttgctcatcatgatcatataatgcatcaatagaagattgttccaaatctgaaaaggtattaacaataatccccttggt |
352 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |
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| T |
29678979 |
caacagcatagataggagggattttttcatcatgatcatataatgcatcaatagaatattgttccaaatctgaaaaggtattaacaataattcctttggt |
29678880 |
T |
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| Q |
353 |
gt |
354 |
Q |
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|| |
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| T |
29678879 |
gt |
29678878 |
T |
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