View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_19 (Length: 363)
Name: NF17964_low_19
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 44 - 348
Target Start/End: Complemental strand, 40126934 - 40126627
Alignment:
| Q |
44 |
aagaagaatggtaaccatgttattggtgcgaagtaatccaccaacattttcgatgactaatctctgcagaggaatctgacccggtcttctttagtcctcc |
143 |
Q |
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| T |
40126934 |
aagaaaaacggtaaccatgttattggtgcgaagtaatccaccaatattttcgatgactaatctctgcagaggaatctgacccggtcttctttagtcctcc |
40126835 |
T |
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| Q |
144 |
cctcccaaccatatttaaattaggctttggtagatgatgacattatactaacaaaattattttaaaattgaatttaaccnnnnnnnttaattcatcatca |
243 |
Q |
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| T |
40126834 |
cctcccaaccatatttaaattaggctttggtagatgatgacattatattaacaaaattattttaaaattgaatttaaccaaaaaaattaattcatcatca |
40126735 |
T |
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| Q |
244 |
t---agcacactatatattattgctgaacaacacaagcagagaatctcatgtattattttatagaaaacatgtaatgcaccaattaataccatttgtatt |
340 |
Q |
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| T |
40126734 |
tagcagcacactatatattattgctgaacaacacaagcagagaatctcatgtattattttatagaaaacatgtaatgcaccaattaataccatttgtatt |
40126635 |
T |
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| Q |
341 |
aaagttta |
348 |
Q |
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| T |
40126634 |
aaagttta |
40126627 |
T |
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