View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17964_low_2 (Length: 624)
Name: NF17964_low_2
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 19 - 618
Target Start/End: Original strand, 43274790 - 43275389
Alignment:
| Q |
19 |
tggatgccttatgagttcagtcatttcccactctagcaaactggatatggtgtctgtacctccaataaacatgtcctaaatataaacaaatacatggtca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43274790 |
tggatgccttatgagttcagtcatttcccactctagcaaactggatatggtgtctgtacctccaataaacatgtcctaaatataaacaaatacatggtca |
43274889 |
T |
|
| Q |
119 |
ataaaatttgcataagattcaaagggtaagaaagagattttaattttacacttaccaataggagagcttttataattgttctatcaataggaaagccaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43274890 |
ataaaatttgcataagattcaaagggtaacaaagagattttaattttacacttaccaataggagagcttttataattgttctatcaataggaaagccaag |
43274989 |
T |
|
| Q |
219 |
tgattctgtcttttggatccaaagcaaaacatcaacaaagtcatcatggtcttcattgactcctttctcgcgattgatatgatcttcaactacatcttcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
43274990 |
tgattctgtcttttggatccaaagcaaaacatcaacaaagtcatcatggtcttcattgactcctttctgacgattgatatgatcttcaactacatcttcc |
43275089 |
T |
|
| Q |
319 |
aaaagttcatcaaattgtttagccacnnnnnnngctcttgcataaaatcctgaaacatgggtcacccaatcaagccagggaacataggctccaacaataa |
418 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
43275090 |
aaaagttcatcaaattgtttagccactttttttgctcttgcataaaatccagaaacatgggtcacccaatcaagccaaggaacataggctccaacaataa |
43275189 |
T |
|
| Q |
419 |
aagcactaagtgactcgttaaattccctcaacaacttcttaaatccctttccactttcaccatcatattttcttcctaaagcaaccctacaaactatatc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43275190 |
aagcactaagtgactcgttaaattccctcaacaacttcttaaatccctttccactttcaccatcatattttcttcctaaagcaaccctacaaactatatc |
43275289 |
T |
|
| Q |
519 |
attagtaattttggaggctaattcacttatattcacaggtaatgatttagaagaatagtgctttattttctccatcattaaacctacttcttcatctctc |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
43275290 |
attagtaattttggaggctaattcacttatattcacaggtaatgatttagaagaatagtgctttattttctccatcattaaacctacttcttcctctctc |
43275389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 151 - 602
Target Start/End: Original strand, 43268032 - 43268486
Alignment:
| Q |
151 |
agagattttaattttacacttaccaataggagagcttttataattgttctatcaataggaaagccaagtgattctgtcttttggatccaaagcaaaacat |
250 |
Q |
| |
|
|||||||||| |||||||| ||||| ||| ||||| ||||| | ||| | |||||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
43268032 |
agagattttagttttacacataccagtagtagagcctttatgaccgttttgtcaataggaaagccaagtgattctgttctttggatccaaagcaaaactt |
43268131 |
T |
|
| Q |
251 |
caacaaagtcatcatggtcttcattgactcctttctcgcgattgatatgatcttcaactacatcttccaaaagttcatcaaattgtttagccacnnnnnn |
350 |
Q |
| |
|
|||||||||||||||| || ||| | |||||||| ||| |||||||||||||| ||| | |||||||| |||||||||||||||||||| |
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|
| T |
43268132 |
caacaaagtcatcatgctcgtcactatctcctttcggattattcatatgatcttcaacaacaccctccaaaagatcatcaaattgtttagccaccttttt |
43268231 |
T |
|
| Q |
351 |
ngctcttgcataaaatcctgaaacatgggtcacccaatcaagccagggaacataggctccaacaataaaagcactaagtgactcgttaaattccctcaac |
450 |
Q |
| |
|
|||||||||||| ||||||||| |||| | | |||||||||||| ||||||||| | ||||||| |||||||| |||| |||| |||| ||| |||| |
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|
| T |
43268232 |
tgctcttgcataatatcctgaaagatggctgaaccaatcaagccaaggaacatagtccccaacaacaaaagcaccaagtaactcagtaaaatccatcaat |
43268331 |
T |
|
| Q |
451 |
aacttcttaaatccctttccactttcaccatcatattttcttcctaaagcaaccctacaaactatatcattagtaattttggaggctaattcacttatat |
550 |
Q |
| |
|
||||| ||||||||| ||| |||||||| ||| |||||||| ||| |||||||||||||||||||||| ||| || | | ||||||||||| || |
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|
| T |
43268332 |
aactttgaaaatcccttcccattttcaccactatactttcttcccaaaacaaccctacaaactatatcattcgtagttgttgccattaattcacttaaat |
43268431 |
T |
|
| Q |
551 |
tcacaggtaatgattt---agaagaatagtgctttattttctccatcattaaacc |
602 |
Q |
| |
|
|| | |||||||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43268432 |
tcgctggtaatgaagtggaagaagaacagtgctttattttctccatcattaaacc |
43268486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 289 - 618
Target Start/End: Original strand, 43310761 - 43311090
Alignment:
| Q |
289 |
cgattgatatgatcttcaactacatcttccaaaagttcatcaaattgtttagccacnnnnnnngctcttgcataaaatcctgaaacatgggtcacccaat |
388 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
43310761 |
cgattgatatgatcttcaactacatcctccaaaagatcatcaaactgtttagcaactttttttgctcttgcataaaatccagaaacattggtcatccaat |
43310860 |
T |
|
| Q |
389 |
caagccagggaacataggctccaacaataaaagcactaagtgactcgttaaattccctcaacaacttcttaaatccctttccactttcaccatcatattt |
488 |
Q |
| |
|
||||||| ||||||||| | ||||||| ||||| || |||| |||| |||| ||| || ||||| ||||||||||| |||||||||||| ||| || |
|
|
| T |
43310861 |
caagccaaggaacatagtcaccaacaacaaaagtaccaagtaactcagtaaaatccaataataactttttaaatcccttcccactttcaccactatactt |
43310960 |
T |
|
| Q |
489 |
tcttcctaaagcaaccctacaaactatatcattagtaattttggaggctaattcacttatattcacaggtaatgatttagaagaatagtgctttattttc |
588 |
Q |
| |
|
||| || |||||||||||||||||||||||||| || || ||||| ||| |||||||||||||| ||||| ||| | ||| || | || ||||||||| |
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|
| T |
43310961 |
tctccccaaagcaaccctacaaactatatcattgatagttgtggagagtaaatcacttatattcacgggtaaagatgtggaacaacaatggtttattttc |
43311060 |
T |
|
| Q |
589 |
tccatcattaaacctacttcttcatctctc |
618 |
Q |
| |
|
|||||||||||||| | |||||| |||||| |
|
|
| T |
43311061 |
tccatcattaaaccaatttcttcctctctc |
43311090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 43267525 - 43267639
Alignment:
| Q |
19 |
tggatgccttatgagttcagtcatttcccactctagcaaactggatatggtgtctgtacctccaataaacatgtcctaaatataaacaaatacatggtca |
118 |
Q |
| |
|
|||||||| || |||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
43267525 |
tggatgccgtaagagttctgtcattgaccactctagcaaagtggatatggtgtctgtacctgcaataaacatgtcctgaatagaaacaaatatatggtca |
43267624 |
T |
|
| Q |
119 |
ataaaatttgcataa |
133 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43267625 |
ataaaatttgcataa |
43267639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 43287326 - 43287440
Alignment:
| Q |
19 |
tggatgccttatgagttcagtcatttcccactctagcaaactggatatggtgtctgtacctccaataaacatgtcctaaatataaacaaatacatggtca |
118 |
Q |
| |
|
|||||||| || |||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
43287326 |
tggatgccgtaagagttctgtcattgaccactctagcaaagtggatatggtgtctgtacctgcaataaacatgtcctgaatagaaacaaatatatggtca |
43287425 |
T |
|
| Q |
119 |
ataaaatttgcataa |
133 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43287426 |
ataaaatttgcataa |
43287440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 43310598 - 43310706
Alignment:
| Q |
153 |
agattttaattttacacttaccaataggagagcttttataattgttctatcaataggaaagccaagtgattctgtcttttggatccaaagcaaaacatca |
252 |
Q |
| |
|
|||||||| ||||||||||||||||| || || || || | |||| | ||||||||||| || || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
43310598 |
agattttagttttacacttaccaataacagggccttaatgactgttttgtcaataggaaaacctagggattctgtcctttggatccaaagcaaaacatca |
43310697 |
T |
|
| Q |
253 |
acaaagtca |
261 |
Q |
| |
|
||||||||| |
|
|
| T |
43310698 |
acaaagtca |
43310706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 43308122 - 43308224
Alignment:
| Q |
19 |
tggatgccttatgagttcagtcatttcccactctagcaaactggatatggtgtctgtacctccaataaacatgtcctaaatataaacaaatacatggtca |
118 |
Q |
| |
|
|||||| |||| |||||| |||||| |||||||||||| ||||||| ||||| |||||| || ||||||||||| || |||||||||| ||||||| |
|
|
| T |
43308122 |
tggatgtcttaagagttctgtcattgaccactctagcaaggtggatatagtgtcagtacctgcagaaaacatgtcctgaagataaacaaattgatggtca |
43308221 |
T |
|
| Q |
119 |
ata |
121 |
Q |
| |
|
||| |
|
|
| T |
43308222 |
ata |
43308224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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