View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_20 (Length: 361)
Name: NF17964_low_20
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 43120983 - 43120808
Alignment:
| Q |
13 |
aaaatcttacccttttgcattgtcaaagacataaattccaacagacccaacaatcaaacttcaacactactcaccaatcgaactacgcaacacgacatta |
112 |
Q |
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| T |
43120983 |
aaaatcttacccttttgcattgtcaaagacataaattccaacaaacccaacaatcaaacttcaacactactcaccaatcgaactacgcaacacgacatta |
43120884 |
T |
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| Q |
113 |
agatttaagatccaatatatcttactcaaattgattaacaaactaaagaattctattgtgaacgacataaatgact |
188 |
Q |
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| T |
43120883 |
agatttaagatccaatatatcttactcaaattgattaacaaactaaagaattctattgtgaacgacataaatgact |
43120808 |
T |
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Back To:
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 43120686 - 43120653
Alignment:
| Q |
310 |
catcactcggtcaaacaaacaaacccactacttt |
343 |
Q |
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| T |
43120686 |
catcactcggtcaaacaaacaaacccactacttt |
43120653 |
T |
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