View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_23 (Length: 331)
Name: NF17964_low_23
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 33586823 - 33587018
Alignment:
| Q |
16 |
gtaagaagagctactaattggaaagcagatacacagagaggacaaggttgaaaatggcaggtgggggatttgccattgatgcaccttcgaatggcttcga |
115 |
Q |
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| T |
33586823 |
gtaagaagagctactaattggaaagcagatacacagagaggacaaggttgaaaatggcaggtgggggatttgccattgatgcaccttcgaatggcttcga |
33586922 |
T |
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| Q |
116 |
cggaaatataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcc |
211 |
Q |
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| T |
33586923 |
cggaaatataacactctcggttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcc |
33587018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 33594017 - 33594190
Alignment:
| Q |
40 |
gcagatacacagaga--ggacaaggttgaaaatggcaggtgggggatttgccattgatgcaccttcgaatggcttcgacggaaatataacactctcagtt |
137 |
Q |
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| T |
33594017 |
gcagatacacagacacaggagaaggttgaaaatggcaggtggagggtttgccattgatgcaccttccaatggctttgatggaaagataacactctcagtt |
33594116 |
T |
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| Q |
138 |
atcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcc |
211 |
Q |
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| T |
33594117 |
atcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcc |
33594190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 33601148 - 33601321
Alignment:
| Q |
40 |
gcagatacacagaga--ggacaaggttgaaaatggcaggtgggggatttgccattgatgcaccttcgaatggcttcgacggaaatataacactctcagtt |
137 |
Q |
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| T |
33601148 |
gcagatacacagacacaggagaaggttgaaaatggcaggtggagggtttgccattgatgcaccttccaatggctttgatggaaagataacactctcagtt |
33601247 |
T |
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| Q |
138 |
atcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcc |
211 |
Q |
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| T |
33601248 |
atcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcc |
33601321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 33561697 - 33561780
Alignment:
| Q |
123 |
ataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtttt |
206 |
Q |
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| T |
33561697 |
ataacactctcagttgtcatcacttgcattgttgcagcatctagtggactcatttttggatatgaccttggaatttcaggtttt |
33561780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 33587200 - 33587244
Alignment:
| Q |
242 |
taaaatgtcaaaatcattagagaaattaacataattgcacaagct |
286 |
Q |
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| T |
33587200 |
taaaatgtcaaaatcattaaagaaattaacataattgcacaagct |
33587244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 33594372 - 33594416
Alignment:
| Q |
242 |
taaaatgtcaaaatcattagagaaattaacataattgcacaagct |
286 |
Q |
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| T |
33594372 |
taaaatgtcaaaatcattaaagaaattaacataattgcacaagct |
33594416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 33601503 - 33601547
Alignment:
| Q |
242 |
taaaatgtcaaaatcattagagaaattaacataattgcacaagct |
286 |
Q |
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| T |
33601503 |
taaaatgtcaaaatcattaaagaaattaacataattgcacaagct |
33601547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 33607998 - 33608078
Alignment:
| Q |
124 |
taacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtt |
204 |
Q |
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| T |
33607998 |
taacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttcaggtt |
33608078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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