View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_25 (Length: 312)
Name: NF17964_low_25
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 41145368 - 41145661
Alignment:
| Q |
3 |
gacagtattaaaattaaaataatgtaaaaaattattccaataacatccttaacaccactataaataaactcttagaggcaacacatcaaaacatatagta |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41145368 |
gacagtattaaaattaaaataatgtaaaaaattattccattaacatccttaacaccactataaataaactcttagaggcaacacatcaaaacatatagta |
41145467 |
T |
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| Q |
103 |
aactagaaccagttagctaagcatttggttaattaattaggagagtatggcacattctcagggcaaagctttggcgcagtggatgataggagcactgctc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41145468 |
aactagaaccagttagctaagcatttggttaattaattaggag--tatggcacattctcagggcaaagctttggcgcagtggatgataggagcactgctc |
41145565 |
T |
|
| Q |
203 |
tttgccatgttggccggcagtctagctgttcaaatatgtaacatagacccaaatgatctaaaacaatcgtgtagtaaattcgttaccggtagaaac |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41145566 |
tttgccatgttggccggcagtctagctgttcaaatatgtaacatagacccaaatgatctaaaacaatcgtgtagtaaattcgttaccggtagaaac |
41145661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 15259070 - 15258921
Alignment:
| Q |
1 |
atgacagtattaaaattaaaataatgtaaaaaattattccaataacatccttaacaccactataaataaactcttagaggcaacacatcaaaacatatag |
100 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259070 |
atgacaatattaaaattaaaataatgtaaattattattccaataacatccttgacaccactataaataaactcttagaggcaacacatcaaaacatatag |
15258971 |
T |
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| Q |
101 |
taaactagaaccagttagctaagcatttggttaattaattaggagagtat |
150 |
Q |
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| T |
15258970 |
taaactagaaccagttagctaagcatttggttaattaattaggagagtat |
15258921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 31141946 - 31142096
Alignment:
| Q |
1 |
atgacagtattaaaattaaaataatgtaaaaaattattccaataacatccttaacaccactataaataaactcttagaggcaacacatcaaaacatatag |
100 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31141946 |
atgacaatattaaaattaaaataatgtaaataattattccaagaacatccttgacaccactataaataaactcttagagacaacacatcaaaacatatag |
31142045 |
T |
|
| Q |
101 |
taaactagaaccagttagctaagcatttggttaattaattaggagagtatg |
151 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
31142046 |
taaactagaaccagtaagctaagcatttagttaattaattaggagagtatg |
31142096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 18747725 - 18747595
Alignment:
| Q |
18 |
aaaataatgtaaaaaattattccaataacatccttaacaccactataaataaactcttagaggcaacacatcaaaacatatagtaaactagaaccagtta |
117 |
Q |
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|||| |||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18747725 |
aaaaaaatgtaaataattattccaataacatccttgacaccaatataaataaactcttagaggcaacacat---gttatatagtaaactagaaccagtta |
18747629 |
T |
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| Q |
118 |
gctaagcatttggttaattaattaggagagtatg |
151 |
Q |
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| T |
18747628 |
gctaagcatttggttaattaattaagagagtatg |
18747595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 30231666 - 30231748
Alignment:
| Q |
69 |
aactcttagaggcaacacatcaaaacatatagtaaactagaaccagttagctaagcatttggttaattaattaggagagtatg |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30231666 |
aactcttagaggcaacacatcaaaacatatagtaaactagaactagttagctaagcatttggttaattaattaggagagtatg |
30231748 |
T |
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