View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_32 (Length: 274)
Name: NF17964_low_32
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 22406002 - 22406183
Alignment:
| Q |
78 |
caattaaatttttccagttcttgagaaatgatacatactctaatctttctctaatttttcagtatttaagaatgaaccactcgttttcaatcaattcaaa |
177 |
Q |
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| T |
22406002 |
caattagatttttccagttcttgagaaatgatacatactataatctttctctaatttttcagtatttaagaatgaaccactcgttttcaatcaatccaga |
22406101 |
T |
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| Q |
178 |
gaagatgtgataatgnnnnnnnattgttcattatttaactttaaaattcaccattcattatcaaattatcatcaatcaaaac |
259 |
Q |
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| T |
22406102 |
gaagatgtgatgatgtttttttattgttcattatttaactttaaaattcaccattcattatcaaattatcatcaatcaaaac |
22406183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 23531332 - 23531480
Alignment:
| Q |
101 |
agaaatgatacatactctaatctttctctaatttttcagtatttaagaatgaaccactcgttttcaatcaattcaaagaagatgtgataatg---nnnnn |
197 |
Q |
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| T |
23531332 |
agaaaggatacatactctaaattttctctaatttttcagtaaaaaataatgaaccactctttttcaaccaacccagagaagatgcgataatgggttgttt |
23531431 |
T |
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| Q |
198 |
nnattgttcattatttaactttaaaattcaccattcattatcaaattat |
246 |
Q |
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| T |
23531432 |
ttattgttcatcttctaactttaaaattcaccattcattatcaaattat |
23531480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 38206592 - 38206545
Alignment:
| Q |
211 |
tttaactttaaaattcaccattcattatcaaattatcatcaatcaaaac |
259 |
Q |
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| T |
38206592 |
tttaactttaaaattcatcattcattatcaaatt-tcatcaattaaaac |
38206545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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