View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_38 (Length: 255)
Name: NF17964_low_38
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 34653715 - 34653492
Alignment:
| Q |
14 |
ataatactaagagaaagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagct |
113 |
Q |
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| T |
34653715 |
ataatactaagagaaagaatcggagtaatagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagct |
34653616 |
T |
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| Q |
114 |
gatgacgaattctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgag |
213 |
Q |
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| T |
34653615 |
gatgacgaattctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgag |
34653516 |
T |
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| Q |
214 |
gaaatggatgggtatgctccaatg |
237 |
Q |
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| T |
34653515 |
gaaattgatgggtatgctccaatg |
34653492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 13643818 - 13643994
Alignment:
| Q |
22 |
aagagaaagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacga |
121 |
Q |
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| T |
13643818 |
aagaaaaagaatcgaggtaacagttcaaagggaacactgcttttgaaatacataatggaagtcacttgtgccaagaaagttgaaaaggagatgatgacta |
13643917 |
T |
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| Q |
122 |
attctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttg |
198 |
Q |
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| T |
13643918 |
attctctgagcatgatgaatatcgggaatcagccaaattatgaaagttctgagagtgattttttctctgaaggtttg |
13643994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 13706267 - 13706443
Alignment:
| Q |
22 |
aagagaaagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacga |
121 |
Q |
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|||| ||||||||| |||||||||||||||||| ||| || |||||||||||||||||||| | | ||| ||| ||| |||||||||| |||||| | |
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| T |
13706267 |
aagaaaaagaatcgaggtaacagttcaaagggaacactgcttttgaaatacataatggaagttacttctgccaagaaagttgaaaaggagatgatgaata |
13706366 |
T |
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| Q |
122 |
attctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttg |
198 |
Q |
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| T |
13706367 |
attctccgagcatgatgaatatcgggaatcagccaaattatgaaagttctgagagtgattttttctctgaaggtttg |
13706443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 17173922 - 17173762
Alignment:
| Q |
38 |
gtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattctacgagcgtgat |
137 |
Q |
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|||| ||||||||||||| ||| || ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||| |||| |
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| T |
17173922 |
gtaagagttcaaagggaatacttcttctgaaatacataatggaagtcaccgatgctaaggaagttgaaaaggagccgatgacgtattctacgagcatgat |
17173823 |
T |
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| Q |
138 |
gaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttg |
198 |
Q |
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| T |
17173822 |
ggatattaaaaatcaactgaattttgaaagctcaaagagtgattttagaactgaaggtttg |
17173762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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