View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_39 (Length: 255)
Name: NF17964_low_39
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 43011028 - 43011201
Alignment:
| Q |
13 |
aaaatagaaataggtctatgagagtgagtgttgacccaagttatactttagcctaggtgcgttatac-----aatcaaattgcgctacaatatgctccct |
107 |
Q |
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| T |
43011028 |
aaaatagagataggtctatgagagtgagtgttgacccaagttatattttagcctaggtgagttatacaatcaaatcaaattgcgctacaatatgctccct |
43011127 |
T |
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| Q |
108 |
aacaataataagcgaaaagaaaaaccttagtcctaccaatttcattgaaaattttacgtagaatttccatataag |
182 |
Q |
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| T |
43011128 |
aacaataataagcg-aaagaaacaccttagtcctaccaatttcattgaaaattttacgtagaatttccatataag |
43011201 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 43011410 - 43011460
Alignment:
| Q |
205 |
tctttgtttaagagtacatgaagcattgggatcattttattacaaacatat |
255 |
Q |
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| T |
43011410 |
tctttgtttaagagtacatgaagcattgggatcattttattacaaaaatat |
43011460 |
T |
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