View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_4 (Length: 603)
Name: NF17964_low_4
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 35 - 281
Target Start/End: Original strand, 6985151 - 6985399
Alignment:
| Q |
35 |
ccttaatttttcatggtccatatttcttccaaaagttttcaacattgtatgnnnnnnntcataactttcaacaattacaactaacaaataaacctatgta |
134 |
Q |
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| T |
6985151 |
ccttaatttttcatggtccatatttcttctaaaagttttcaacattgtatgaaaaaaatcataactttcaacaataacaactaacaaatacacctatgta |
6985250 |
T |
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| Q |
135 |
ccnnnnnnnnnnnnncaattaacaaacacccaccacatggatcttaccaaaccctcaattaccaagagattcatat-aaaatcatttacaaaact-atta |
232 |
Q |
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| T |
6985251 |
ccaaaaataaaaaaacaattaacaaacacccaccacatggatcttaccaaaccctcaattaccaagagattcatataaaaatcatttacaaaactaatta |
6985350 |
T |
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| Q |
233 |
aaccagagagtttgggtttgatctaaattttatacttctctcaagtgat |
281 |
Q |
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| T |
6985351 |
aaccagagaatttgggtttgatctaaattttatacttctctcaagtgat |
6985399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 322 - 493
Target Start/End: Original strand, 6985442 - 6985615
Alignment:
| Q |
322 |
tccaatgttttagatttgagtagggacaaagtctcaatgtgtatcacggtagatttgctcaaattacatttgtttaccgaaattctgacaaattcactgt |
421 |
Q |
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| T |
6985442 |
tccaatgttttagatttgagtagtgacaaagtctcaatgtgtatcacggtagatttgctcaaattacatttgtttattgaaattctgacaaattcaccgt |
6985541 |
T |
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| Q |
422 |
gataccaaaacataccagagacacgt--nnnnnnnnctttgatgtccccacatagatcatagggacataatcta |
493 |
Q |
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| T |
6985542 |
gataccaaaacatatcagaggcacataaaaaaaaaagtttgatgtccccacatagatcatagggacataatcta |
6985615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 533 - 585
Target Start/End: Original strand, 6985653 - 6985705
Alignment:
| Q |
533 |
tttaccaggacgaagattttcagaaccagaattgatgaggttgatgagaccag |
585 |
Q |
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| T |
6985653 |
tttaccaggacgaagattttcagaaccagaattgatgaggttgatgagaccag |
6985705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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