View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17964_low_40 (Length: 252)
Name: NF17964_low_40
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_40 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 8344503 - 8344282
Alignment:
| Q |
18 |
acctgaaccaccaactgcaccattgccgtatcctccaccactattaatgccaataccaccaccatagctatgcaaatgatgaagatatctcatttcttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8344503 |
acctgaaccaccaactgcaccattgccgtatcctccaccactattaatgccaataccaccaccatagctatgcaaatgatgaagatgtctcatttcttca |
8344404 |
T |
|
| Q |
118 |
ctatctccaccaagctttctaaagcgactagctagacaagtaattggacaaagaaaaacaagtaaaaacaatttagaaatcatgactaccaattgcgtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8344403 |
ctatctccaccaagctttctaaagcgactagctagacaagtaattggacaaagaaaaacaagtaaaaacaatttagaaatcatgactaccaattgcgtaa |
8344304 |
T |
|
| Q |
218 |
cactttgtgatatgacaaaaaa |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8344303 |
cactttgtgatatgacaaaaaa |
8344282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University