View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17964_low_44 (Length: 236)
Name: NF17964_low_44
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_44 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 15073650 - 15073429
Alignment:
| Q |
15 |
agttatcacattggcacacttacacaaagaaagtgaagacgaaatcttataaatgttactattctccgaatctagaatcagaagctccccattagacaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15073650 |
agttatcacattggcacacttacacaaagaaagtgaagacgaaatcttataaatgttactattctccgaatctagaatcagaagctccccattagacaac |
15073551 |
T |
|
| Q |
115 |
acctcaactgcataaggctcaattccaagcttgcttccatcaaacacagtttccacattgtatccactctcaaacttcatcattgacttcccagcaatcg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15073550 |
acctcaactgcataaggctcaattccaagcttgcttccatcaaacacagtttccacattgtatccactctcaaacttcatcattgacttcccagcaatcg |
15073451 |
T |
|
| Q |
215 |
ctgccattcaacattccaattc |
236 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15073450 |
ctgccattcaacattccaattc |
15073429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 26717666 - 26717831
Alignment:
| Q |
32 |
acttacacaaagaaagtgaagacgaaatcttataaatgttactattctccgaatctagaatcagaagctccccattagacaacacctcaactgcataagg |
131 |
Q |
| |
|
||||||||||||| ||||| || || || | |||| ||||||||| | ||||| ||||| ||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
26717666 |
acttacacaaagagagtgatgaagagattctgtaaaggttactattagcagaatcaagaataagaagctccccattatgcaaaacctcaacagcataagg |
26717765 |
T |
|
| Q |
132 |
ctcaattccaagcttgcttccatcaaacacagtttccacattgtatccactctcaaacttcatcat |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
26717766 |
ctcaattccaagcttacttccatcaaacacagtttccacattgtaaccactctcaaatttcatcat |
26717831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 1851052 - 1850989
Alignment:
| Q |
130 |
ggctcaattccaagcttgcttccatcaaacacagtttccacattgtatccactctcaaacttca |
193 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||| |||| |
|
|
| T |
1851052 |
ggctcaattccaagcttacttccatcaaatattgtttccacattgtaaccactctcaaatttca |
1850989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University