View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_45 (Length: 236)
Name: NF17964_low_45
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49085938 - 49085703
Alignment:
| Q |
1 |
taatagtatatacataagcacatatgtgataaacaatactta-------------tccaagcaaggactatattgtatttgcctgtattgaaatcagaag |
87 |
Q |
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| T |
49085938 |
taatagtatatacataagcacatatatgataaacaatacttaattaagctatttatccaagcaaggactatattgtatttgcctgtattgaaatcagaag |
49085839 |
T |
|
| Q |
88 |
caaaatgccaaattctcttcattatatgcgaagacaaaaatggtaagcaacaaagaacttgttaaccacagacagcaag-cgccaaacagcattaaataa |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49085838 |
caaaatgccaaattctcttcattatatgcgaagacaaaaatggtaagcaacaaagaacttgttaaccacagacagcaagacgccaaacagcattaaataa |
49085739 |
T |
|
| Q |
187 |
atacaat-ggtattaatagtaacttacagaattatc |
221 |
Q |
| |
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||| ||| |||||||||||||||||||||||||||| |
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| T |
49085738 |
ataaaataggtattaatagtaacttacagaattatc |
49085703 |
T |
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