View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_50 (Length: 218)
Name: NF17964_low_50
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 47728000 - 47727836
Alignment:
| Q |
13 |
gatatgaagtggctagtccaagaagtgtggaagcaattaatgctgggtgtgtacctgtgattatttctcagaattattccttgcctttcaatgatgtgtt |
112 |
Q |
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| T |
47728000 |
gatatgaagtggctagtccaagaattgtggaagcaattaatgctgggtgtgtacctgtgattatttctcagaattattccttgcctttcaatgatgtgtt |
47727901 |
T |
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| Q |
113 |
gaattggagtgaattttcagttgaaattccagtggagaaaatagtagagattaagaatatattac |
177 |
Q |
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| T |
47727900 |
gaattggagtgaattttcagttgaaattccagtggagaaaatagtagagattaagaatatattac |
47727836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 47725825 - 47725714
Alignment:
| Q |
16 |
atgaagtggctagtccaagaagtgtggaagcaattaatgctgggtgtgtacctgtgattatttctcagaattattccttgcctttcaatgatgtgttgaa |
115 |
Q |
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| T |
47725825 |
atgaagtggcaagtccaagagtggtggaagcaatttatgcaggatgtgtcccagtgataatttgtgacaattactctttgccttttagtgatgtgcttaa |
47725726 |
T |
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| Q |
116 |
ttggagtgaatt |
127 |
Q |
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| T |
47725725 |
ttggagtcaatt |
47725714 |
T |
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