View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_7 (Length: 528)
Name: NF17964_low_7
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_7 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 528
Target Start/End: Complemental strand, 13716121 - 13715610
Alignment:
| Q |
15 |
tctccgatcaaacatcatatttctttttccatttggcttcggcttaagccttttgttcctcctgtgtttattaattctaattggaacatagggaatgtgg |
114 |
Q |
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| T |
13716121 |
tctccgatcaagcatcatattgcttcttccatttggcttcggcttaagccttttgttcagcctgtgttgaataattctaattggaacatagggaatgtgg |
13716022 |
T |
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| Q |
115 |
agactgttctcttttggaaggacatgtggcccggtgagccattggtgcagtctctaagcattcctactcatttgcatacttagctgaacatgaaggtgtc |
214 |
Q |
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| T |
13716021 |
agaatgttctcttttggaagcacatgtggcccggtgagccattggtgaagtctctaagcattcctactcatttgcatgcttagctgaacatgaaggtgtc |
13715922 |
T |
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| Q |
215 |
atattacattgtgcaccaacaatggcagattccctcatacattagccgtaaatatcctactttgacggtgctgatacaaaatacgactctttgcattgaa |
314 |
Q |
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| T |
13715921 |
atattacatcgtgcaccaacaatggcagattccctcatacattagccctaaatatcctactttgacggtgctgatacaaaataccactctttgcattgaa |
13715822 |
T |
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| Q |
315 |
cctcaaaatgactgtttgcattggcttcactctatggatggggatttgtccaacaagttagcttatgattttctgaatacgaatcaagttgagttggtgc |
414 |
Q |
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| T |
13715821 |
cctcaaaatgactgtttgcattggcttcactctatggatggggatttgtctaacaagttagcttatgattttctgaatacgaatcaagttgagttggtgc |
13715722 |
T |
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| Q |
415 |
aagtttatttgaaatgcctttgtccccaccccccacatnnnnnnnnnnnnnnnntcgggccttcatttgtttggagattggctcatcataagcttctaac |
514 |
Q |
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| T |
13715721 |
aagtttatttggaatgcctttgtccccaccccccacat--acacacacacacactcgggccttcatttgtttaaagattggctcatcaaaagcttctaac |
13715624 |
T |
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| Q |
515 |
taatgaccagttac |
528 |
Q |
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| T |
13715623 |
tgatgaccagttac |
13715610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 36389 - 36099
Alignment:
| Q |
15 |
tctccgatcaaacatcatatttctttttccatttggcttcggcttaagccttttgttcctcctgtgtttattaattctaattggaacatagggaatgtgg |
114 |
Q |
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||||||||| ||||||||| | ||| ||| ||||||| |||||||||| ||||||| | ||||| ||||||||| |||||| || ||||||| || |
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| T |
36389 |
tctccgatccaacatcatactacttattcgatttggcctcggcttaagtcttttgtgcagttggtgttagttaattctacttggaatattgggaatgggg |
36290 |
T |
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| Q |
115 |
agactgttctcttttggaaggacatgtggcccggtgagccattggtgcagtctctaagcattcctactcatttgcatacttagctgaacatgaaggtgtc |
214 |
Q |
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||| |||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||| | ||||| ||| || ||||| ||||||||||||| |
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| T |
36289 |
agaatgttctcttttggaaggacaggtggttgggtgagccgttggtgcagtctctcagcattccttcacattttcatgctcagctggacatgaaggtgtc |
36190 |
T |
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| Q |
215 |
atattacattgtgcaccaacaatggcagattccctcatacattagccgtaaatatcctactttgacggtgctgatacaaaatacgactctt |
305 |
Q |
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| T |
36189 |
agattacattctgcaccatcaatggcggattcccacctacattagttctaaatatcctaccttgacggttcagatacaaaataccactctt |
36099 |
T |
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