View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17964_low_8 (Length: 525)
Name: NF17964_low_8
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Complemental strand, 6164722 - 6164227
Alignment:
| Q |
12 |
caaaggggaaaatgcagcaagcccaggcagctatccacgcaggcacagcagtnnnnnnncacctcccctactgctgcatccatctcagccgactgggagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6164722 |
caaaggggaaaatgcagcaagcccaggcagctatccacgcaggcacagcagtaaaaaaacacctcccctactgctgcatccatctcagccgactgggagt |
6164623 |
T |
|
| Q |
112 |
ccttcgaaggcaccattgtagattccaagtccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacc |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6164622 |
ccttcgaaggcaccattgtggattccaagtccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacc |
6164523 |
T |
|
| Q |
212 |
tcttccacaatagcatccacctcacaattaacatcattaaaaagaaagaaatatgaaaataaaatccccatccatcctcctgtcttgttgattatttcac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6164522 |
tcttccacaatagcatccacctcacaattaacatcattaaaaagaaagaaatatgaaaataaaatccccatccatcctcctgtcttgttgattatttcac |
6164423 |
T |
|
| Q |
312 |
ttcataaatcttgaaatcaatggcctaataatgaaaaaactcaagatatatgcattgatcatat-tctcttgagccacattacgaaatccctctgactta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6164422 |
ttcataaatcttgaaatcaatggcctaataatgaaacaactcaagatatatgcattgatcatatctctcttgagccacattacgaaatccctctgactta |
6164323 |
T |
|
| Q |
411 |
tgtgtactgctccctgcagaatgataaatgctggtcctgctggtgagattctcccagccgtttcatcgtcagtggcgaggagagaatgcagctgaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6164322 |
tgtgtactgctccctgcagaatgataaatgctggtcctgctggtgagattctcccagccgtttcatcgtcagtggcgaggagagaatgcagctgaa |
6164227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 251 - 506
Target Start/End: Complemental strand, 6139168 - 6138910
Alignment:
| Q |
251 |
aaaagaaagaaatatgaaaataaaatccccatccatcctcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaaaaa |
350 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| || |
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|
| T |
6139168 |
aaaagaaagaaataggaaagtaaaaaccccatccatcttcctgtcttgttgattatttcaatttataaatcttgaaatctatggcctaataatgaaacaa |
6139069 |
T |
|
| Q |
351 |
ctcaagatatatgcattgatcatat---tctcttgagccacattacgaaatccctctgacttatgtgtactgctccctgcagaatgataaatgctggtcc |
447 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| ||||||||||||| ||||||| |||||||| | ||||| |
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|
| T |
6139068 |
ctcaagatatatgcattgatcatatctctctctcgagccactttacgaaatccctttgacctatgtgtactgctgtctgcagattgataaattcaggtcc |
6138969 |
T |
|
| Q |
448 |
tgctggtgagattctcccagccgtttcatcgtcagtggcgaggagagaatgcagctgaa |
506 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
6138968 |
tgctggtgagattctcccagccatttcatcatcagtggtgaggagagaatgcagctgaa |
6138910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 251 - 506
Target Start/End: Original strand, 13282925 - 13283188
Alignment:
| Q |
251 |
aaaagaaagaaatatgaaaataaaat--ccccatccatcctcctgtcttgttgatta-----tttcacttcataaatcttgaaatcaatggcctaataat |
343 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
13282925 |
aaaagaaagaaatatgaaagtaaaaaaaccccatccatcttcctgtcttgttgattactccatttcacttcataaatcttgaaatctatggcctaataat |
13283024 |
T |
|
| Q |
344 |
gaaaaaactcaagatatatgcattgatcatat-tctcttgagccacattacgaaatccctctgacttatgtgtactgctccctgcagaatgataaatgct |
442 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |
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|
| T |
13283025 |
aaaacaactcaagatatatgcattgatcatatctctctcgagccactttacgaaatccctctgacttatgcgtactgctctctgcagattgataaatgct |
13283124 |
T |
|
| Q |
443 |
ggtcctgctggtgagattctcccagccgtttcatcgtcagtggcgaggagagaatgcagctgaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||| |
|
|
| T |
13283125 |
ggtcctgctggtgagattctcccagccgtttcatcatcagtagagatgagagaatgcagctgaa |
13283188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 349 - 506
Target Start/End: Complemental strand, 6234174 - 6234016
Alignment:
| Q |
349 |
aactcaagatatatgcattgatcatat-tctcttgagccacattacgaaatccctctgacttatgtgtactgctccctgcagaatgataaatgctggtcc |
447 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
6234174 |
aactcaagatatatgcattgatcatatatctctcgagacactttacgaaatccctctgacctatgtgtactgctctctgcagattgataaatgctggtcc |
6234075 |
T |
|
| Q |
448 |
tgctggtgagattctcccagccgtttcatcgtcagtggcgaggagagaatgcagctgaa |
506 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
6234074 |
tgctggtgagattctcccagccatttcatcatcagcggcgaggagagaatgcagctgaa |
6234016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 350 - 506
Target Start/End: Complemental strand, 6241959 - 6241802
Alignment:
| Q |
350 |
actcaagatatatgcattgatcatat-tctcttgagccacattacgaaatccctctgacttatgtgtactgctccctgcagaatgataaatgctggtcct |
448 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||| |||||||||| ||| ||||||| ||||||||||||||||| |
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|
| T |
6241959 |
actcaagatatatgcattgatcatatctctctcgagccactttacggaatccctctgacctatgtgtacttctcactgcagattgataaatgctggtcct |
6241860 |
T |
|
| Q |
449 |
gctggtgagattctcccagccgtttcatcgtcagtggcgaggagagaatgcagctgaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
6241859 |
gctggtgagattctcccagccgtttcatcatcaagggcgaggagagaatgtagctgaa |
6241802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 352 - 506
Target Start/End: Complemental strand, 6255185 - 6255031
Alignment:
| Q |
352 |
tcaagatatatgcattgatcatat-tctcttgagccacattacgaaatccctctgacttatgtgtactgctccctgcagaatgataaatgctggtcctgc |
450 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||| ||| |||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
6255185 |
tcaagatataagcattgatcatatctctctcgagtcactttacgaaatccctctgacctgtgtgtactgctctttgcagattgataaatgctggtcctgc |
6255086 |
T |
|
| Q |
451 |
tggtgagattctcccagccgtttcatcgtcagtggcgaggagagaatgcagctgaa |
506 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
6255085 |
tggtgaga-tctcccagccgtctcatcatcagtggtgagtagagaatgcagctgaa |
6255031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 368548 - 368435
Alignment:
| Q |
141 |
tccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaatt |
240 |
Q |
| |
|
||||||| ||| ||| | ||||||||||| ||| |||||| | |||||| |||||||| ||||||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
368548 |
tccactcgaaatacaaagaaaccgggatgtgcaatctacctatgacccacctccaagccttgactttcacctcctccaccatagcatccacctcaaaatt |
368449 |
T |
|
| Q |
241 |
aacatcattaaaaa |
254 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
368448 |
aacatcattaaaaa |
368435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 14732903 - 14733009
Alignment:
| Q |
148 |
aaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaattaacatca |
247 |
Q |
| |
|
|||||||||||||||||| |||||| | | ||||||||||||| ||||||||| ||||| | ||| ||||| | || ||||||||||||||||||||| |
|
|
| T |
14732903 |
aaaaaacatacaaaccggaatgcgcgtccgacccaacacccacctccaagccaccactttgatctcctccaccacggcgtccacctcacaattaacatca |
14733002 |
T |
|
| Q |
248 |
ttaaaaa |
254 |
Q |
| |
|
||||||| |
|
|
| T |
14733003 |
ttaaaaa |
14733009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 26447025 - 26447137
Alignment:
| Q |
142 |
ccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaatta |
241 |
Q |
| |
|
|||||||||||| | |||||||| || |||||||||| || | ||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
26447025 |
ccactcaaaaaataagcaaaccggaatacgcattctacacatcgcccacttccaagccaacactttcaccttttccacaatgacatccacctcaaaatta |
26447124 |
T |
|
| Q |
242 |
acatcattaaaaa |
254 |
Q |
| |
|
||||||| |||| |
|
|
| T |
26447125 |
gcatcattgaaaa |
26447137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 3700611 - 3700541
Alignment:
| Q |
184 |
cacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaattaacatcattaaaaa |
254 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
3700611 |
cacccacttccaagccaacactttcacctcttcaacaattgcatccacctctacattaacatcgttaaaaa |
3700541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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