View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_low_9 (Length: 497)
Name: NF17964_low_9
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 450
Target Start/End: Original strand, 40547006 - 40547462
Alignment:
| Q |
17 |
aagtcattcatcatcaagaaacgtggaagagaagaggaagaagacatggctattattat------------------aacagtgataaatttggtcattt |
98 |
Q |
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| T |
40547006 |
aagtcattcatcatcaagaaacgtggaagagaagaggaagaagacatggctattattatcataatcataatgcttataacagtgataaatttggtcattt |
40547105 |
T |
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| Q |
99 |
ttcatgggaatgtcgtagtgctcatataccactaaaaattcaccatttagcaaccagtttaatgaccgagttatttcagtcaccatagagaccaaattaa |
198 |
Q |
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| T |
40547106 |
ttcatgggaatgtcgtagtgctcatataccactaaaaattcaccatgtagcaaccagtttaatgaccgagttatttcagtcaccatagagacca----aa |
40547201 |
T |
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| Q |
199 |
tgagtctgtgatcgatttgtgaaatgactctaaaccactagtagctaatgt-gcatatgccaaggaatacaatgcttaccttgaa--------tctaaaa |
289 |
Q |
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| T |
40547202 |
taagtctgtgatcgatttgtgaaatgactctaaaccactagtagctaatgtggcatatgccaaggaatacaatgcttaccctaaaccctaaaccctaaaa |
40547301 |
T |
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| Q |
290 |
ttcactcaagcaaaatgcttagcatatggctttgataaatatacaaagttatttctataaataaatattggctaaatcttgagactttctttaattccga |
389 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
40547302 |
ttcacttaagcaaaatgcttagcatatggctttgataaatatacaaaattatttctataaataaatattggctaaattttcagactttctttaattccga |
40547401 |
T |
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| Q |
390 |
taaatttttcaaaatccaactcgtctaaagtatttcctatacaaattatacaagccaaggt |
450 |
Q |
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| T |
40547402 |
taaatttttcaaaatccaactcgtctaaagtatttcgtatacaaattatacaagtcaaggt |
40547462 |
T |
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