View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17965_high_7 (Length: 241)

Name: NF17965_high_7
Description: NF17965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17965_high_7
NF17965_high_7
[»] chr3 (30 HSPs)
chr3 (4-225)||(8471144-8471365)
chr3 (15-225)||(7587449-7587665)
chr3 (4-225)||(6839132-6839356)
chr3 (15-139)||(8569184-8569308)
chr3 (2-140)||(6168584-6168722)
chr3 (4-140)||(6916794-6916930)
chr3 (24-140)||(6899781-6899897)
chr3 (15-140)||(6480221-6480346)
chr3 (20-140)||(6735655-6735775)
chr3 (15-134)||(6946940-6947059)
chr3 (14-140)||(6449025-6449151)
chr3 (20-133)||(6554682-6554795)
chr3 (17-187)||(4389181-4389351)
chr3 (27-132)||(6722317-6722422)
chr3 (17-140)||(5298399-5298522)
chr3 (24-140)||(7749695-7749811)
chr3 (17-140)||(8589394-8589517)
chr3 (151-225)||(6794989-6795063)
chr3 (19-139)||(6520405-6520525)
chr3 (4-140)||(6591553-6591689)
chr3 (17-140)||(6265384-6265507)
chr3 (4-140)||(13270759-13270889)
chr3 (17-140)||(5267724-5267847)
chr3 (14-140)||(5280343-5280469)
chr3 (15-140)||(8454319-8454444)
chr3 (4-140)||(6141979-6142115)
chr3 (4-140)||(6244986-6245116)
chr3 (30-140)||(6882197-6882307)
chr3 (4-52)||(6258977-6259025)
chr3 (165-225)||(8569343-8569403)
[»] chr7 (2 HSPs)
chr7 (15-140)||(6573534-6573659)
chr7 (164-225)||(6573689-6573750)
[»] scaffold0425 (1 HSPs)
scaffold0425 (20-140)||(7721-7841)
[»] chr4 (1 HSPs)
chr4 (17-135)||(25242374-25242493)
[»] chr1 (1 HSPs)
chr1 (15-140)||(35140583-35140708)
[»] scaffold0958 (1 HSPs)
scaffold0958 (165-225)||(253-313)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 8471365 - 8471144
Alignment:
Q  4 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||    
T  8471365 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaatgttgcagaagagacaaaagtgaggaagagttgggtaatgaattctt 8471266  T
Q  104 tgatgatctagagtccatttcatttttccaacaatcactagatgatcataagagtatagtcatgcacgatcttgtcaatgatttgttaaaatcagagtcc 203  Q
    ||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  8471265 tgatgatcttgagtccatttcatttctccaacaatcactagaagatcataagagtatagtcatgcatgatcttgtcaatgatttggcaaaatcagagtcc 8471166  T
Q  204 caagagttttgcttacaaattg 225  Q
    ||||||||||||||||||||||    
T  8471165 caagagttttgcttacaaattg 8471144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 7587665 - 7587449
Alignment:
Q  15 gatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctag 114  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  7587665 gatgaattgatcaagctttggatggcagaaggtttgctgaaatgttgcggaagagacaaaagtgaagaagagttgggtaatgaattcttggatgatctag 7587566  T
Q  115 agtccatttcatttttccaacaatcactaga------tgatcataagagtatagtcatgcacgatcttgtcaatgatttgttaaaatcagagtcccaaga 208  Q
    |||||||||||||||| |||||| |||||||      || | |||||||  || ||||||| ||||||||||||||||||  ||||||||||||||| ||    
T  7587565 agtccatttcattttttcaacaaccactagattattttggtgataagagattattcatgcatgatcttgtcaatgatttggcaaaatcagagtcccatga 7587466  T
Q  209 gttttgcttacaaattg 225  Q
    |||||||||||||||||    
T  7587465 gttttgcttacaaattg 7587449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 6839132 - 6839356
Alignment:
Q  4 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||| ||||| | ||||||| |    
T  6839132 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaatactgcggaagagacaaaagtgaagaagaattgggaaatgaattcat 6839231  T
Q  104 tgatgatctagagtccatttcatttttccaacaat--cacta-gatgatcataagagtatagtcatgcacgatcttgtcaatgatttgttaaaatcagag 200  Q
     ||| | ||||||||||||||||||||| ||||||   |||| |||| || ||  ||  |  ||||||| |||||||| |||||||||  |||||| |||    
T  6839232 ggattacctagagtccatttcatttttcgaacaattaaactatgatggtcgtacaagatttctcatgcatgatcttgttaatgatttggcaaaatctgag 6839331  T
Q  201 tcccaagagttttgcttacaaattg 225  Q
    |||||||||||||||||||||||||    
T  6839332 tcccaagagttttgcttacaaattg 6839356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 8569184 - 8569308
Alignment:
Q  15 gatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctag 114  Q
    |||||||||||||||||||||||||||||||||||| ||||  |||||  |||||||||||||||||||||| |||||| ||| ||||| |||||||| |    
T  8569184 gatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctgg 8569283  T
Q  115 agtccatttcatttttccaacaatc 139  Q
    ||||||||||||||||||| |||||    
T  8569284 agtccatttcatttttccagcaatc 8569308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 6168722 - 6168584
Alignment:
Q  2 taagtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattc 101  Q
    ||||||||| | ||||| ||| |||||||||||||||||| |||||||||| ||  ||||| ||| |||||||| ||||||||||||||||| |||||||    
T  6168722 taagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaagtgttgcggaaaagacaaaaatgaagaagagttgggtaatgaattc 6168623  T
Q  102 tttgatgatctagagtccatttcatttttccaacaatca 140  Q
    |||||| |||||| ||| || ||||||||||||||||||    
T  6168622 tttgatcatctagtgtcaatgtcatttttccaacaatca 6168584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 6916930 - 6916794
Alignment:
Q  4 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctt 103  Q
    ||||||| | || |||||| ||||||||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||| |||||| ||    
T  6916930 agtttgagaagggtgaattaatcaagctttggatggcagaaggtttgctgaagtgttgtggaagagacaaaagtgaagaagagttgggtaatgaattttt 6916831  T
Q  104 tgatgatctagagtccatttcatttttccaacaatca 140  Q
      ||||||||| ||| || ||||||||||||| ||||    
T  6916830 caatgatctagtgtcaatatcatttttccaacgatca 6916794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 6899897 - 6899781
Alignment:
Q  24 atcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagagtccattt 123  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| |||||||||  | ||||||| ||| ||      
T  6899897 atcaagctttggatggcagaaggtttgctgaagtgttgcggaagagacaaaagtgaagaagagttgggtaatgaattcttcaacgatctagtgtcaataa 6899798  T
Q  124 catttttccaacaatca 140  Q
    |||||||||| ||||||    
T  6899797 catttttccagcaatca 6899781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 6480221 - 6480346
Alignment:
Q  15 gatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctag 114  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||| ||  | ||||||||||||||||||| |||| |||| | || | |||||| |    
T  6480221 gatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcggatcatacaaaagtgaagaagagtttggtaatgaaattttcggtgatcttg 6480320  T
Q  115 agtccatttcatttttccaacaatca 140  Q
    |||| |||||||||||||||||||||    
T  6480321 agtcaatttcatttttccaacaatca 6480346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 6735775 - 6735655
Alignment:
Q  20 attgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagagtcc 119  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||  ||||||||||||||||||||| || | |||| | || | |||||| |||||     
T  6735775 attgatcaagctttggatggcagaaggtttgctgaagtgttgcggatcagacaaaagtgaagaagagtttggcaatgaaattttcggtgatcttgagtca 6735676  T
Q  120 atttcatttttccaacaatca 140  Q
    |||||||||||||||||||||    
T  6735675 atttcatttttccaacaatca 6735655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 6947059 - 6946940
Alignment:
Q  15 gatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctag 114  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||||||||||| |||| |||| | ||   |||||| |    
T  6947059 gatgaattgatcaagctttggatggcagaaggtttgttgaagtgttgcagaagagacaaaagtgaagaagagttaggtaatgaaattttcagtgatcttg 6946960  T
Q  115 agtccatttcatttttccaa 134  Q
    |||| ||||| |||||||||    
T  6946959 agtcaatttcgtttttccaa 6946940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 6449025 - 6449151
Alignment:
Q  14 ggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatcta 113  Q
    |||||||||||||||||||||||||||||||||| || ||||  ||||| ||  ||||||||||||||||||||| |||| |||| | ||   ||||||     
T  6449025 ggatgaattgatcaagctttggatggcagaaggtatgttgaagtgttgcggatcagacaaaagtgaagaagagtttggtaatgaaattttctgtgatctt 6449124  T
Q  114 gagtccatttcatttttccaacaatca 140  Q
    ||||| |||||||||||||||||||||    
T  6449125 gagtcaatttcatttttccaacaatca 6449151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 6554682 - 6554795
Alignment:
Q  20 attgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagagtcc 119  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||  ||||||||||||||||||||| |||| |||| | || | |||||| |||||     
T  6554682 attgatcaagctttggatggcagaaggtttgctgaagtgttgcggatcagacaaaagtgaagaagagtttggtaatgaaattttcggtgatcttgagtca 6554781  T
Q  120 atttcatttttcca 133  Q
    ||||||||||||||    
T  6554782 atttcatttttcca 6554795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 4389181 - 4389351
Alignment:
Q  17 tgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagag 116  Q
    |||||| |||||||||||||| || || |||||| ||||  ||||| |||| ||||||||||||||||||||||||| ||| || |||| |||||||||     
T  4389181 tgaattaatcaagctttggatagcggatggtttgttgaagtgttgcggaagtgacaaaagtgaagaagagttgggtaatgagttatttgttgatctagaa 4389280  T
Q  117 tccatttcatttttccaacaatcactagatgatcataagagtatagtcatgcacgatcttgtcaatgattt 187  Q
    || ||||||||||||||  ||||| || ||||  ||||| || | || |||||| ||||| |||| |||||    
T  4389281 tcaatttcatttttccagaaatcaatacatgacgataagcgttttgtaatgcacaatcttatcaacgattt 4389351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 6722317 - 6722422
Alignment:
Q  27 aagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagagtccatttcat 126  Q
    |||||||||||| |||||| |||| ||||  ||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||| || ||||    
T  6722317 aagctttggatgacagaagatttgttgaagtgttgcggaagagacaaaagtgaacaagagttgggtaatgaattctttgatcatctagtgtcaatatcat 6722416  T
Q  127 ttttcc 132  Q
    ||||||    
T  6722417 ttttcc 6722422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 5298522 - 5298399
Alignment:
Q  17 tgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagag 116  Q
    |||||| ||||||||||||||||||||||||||| ||||  | ||| |||  || |||| ||||||||||||||||| |||||||||||| ||||||||     
T  5298522 tgaattaatcaagctttggatggcagaaggtttgttgaagtgctgcagaattgataaaactgaagaagagttgggtaatgaattctttgacgatctagaa 5298423  T
Q  117 tccatttcatttttccaacaatca 140  Q
    ||  |||||||||| |||| ||||    
T  5298422 tcagtttcattttttcaacgatca 5298399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 7749811 - 7749695
Alignment:
Q  24 atcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagagtccattt 123  Q
    ||||||||||||||||||||||| ||||| ||  ||||  |||||||||||| ||||||| ||||||||| |||||||||  || |||||| ||| || |    
T  7749811 atcaagctttggatggcagaaggcttgctaaagtgttggggaagagacaaaactgaagaacagttgggtaatgaattcttcaattatctagtgtcaatat 7749712  T
Q  124 catttttccaacaatca 140  Q
    | |||||||||||||||    
T  7749711 cgtttttccaacaatca 7749695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 8589517 - 8589394
Alignment:
Q  17 tgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagag 116  Q
    ||||||||||||||| |||||||||||||||||  ||||  ||||| ||  | ||||||||||||||||||| |||| |||| | || | |||||| |||    
T  8589517 tgaattgatcaagctctggatggcagaaggtttattgaagtgttgcggatcacacaaaagtgaagaagagttaggtaatgaaattttcggtgatcttgag 8589418  T
Q  117 tccatttcatttttccaacaatca 140  Q
    || |||||||||||||||| ||||    
T  8589417 tcaatttcatttttccaacgatca 8589394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 6794989 - 6795063
Alignment:
Q  151 ataagagtatagtcatgcacgatcttgtcaatgatttgttaaaatcagagtcccaagagttttgcttacaaattg 225  Q
    ||||| ||||||||||||| ||||||||||||||||||  |||||||| |||||| |||||||||||||||||||    
T  6794989 ataagtgtatagtcatgcatgatcttgtcaatgatttggcaaaatcagtgtcccatgagttttgcttacaaattg 6795063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 6520405 - 6520525
Alignment:
Q  19 aattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagagtc 118  Q
    |||||||||||||||||||||||||||||||| ||||  ||| | ||   ||||||||||||||||| || |||| |||| | || | |||||| |||||    
T  6520405 aattgatcaagctttggatggcagaaggtttgttgaagtgttacggattggacaaaagtgaagaagattttggtaatgaaattttcggtgatcttgagtc 6520504  T
Q  119 catttcatttttccaacaatc 139  Q
     ||||||||||||||| ||||    
T  6520505 aatttcatttttccaaaaatc 6520525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 6591553 - 6591689
Alignment:
Q  4 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctt 103  Q
    ||||||| | || |||||| ||||||||||||||||||||||| ||||| ||  ||||   |||| |||||||||||||| ||||||| | |||||||||    
T  6591553 agtttgagaagggtgaattaatcaagctttggatggcagaaggcttgctaaagtgttgggaaagacacaaaagtgaagaaaagttgggcaatgaattctt 6591652  T
Q  104 tgatgatctagagtccatttcatttttccaacaatca 140  Q
      || |||||| ||| || || |||||||||||||||    
T  6591653 caatcatctagtgtcaatatcgtttttccaacaatca 6591689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 6265507 - 6265384
Alignment:
Q  17 tgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagag 116  Q
    |||||| |||| |||||||||||||||||||||| | ||  ||||| ||||| |||||||  |||||||||| || | ||||||||| ||| | |||| |    
T  6265507 tgaattaatcaggctttggatggcagaaggtttgttaaattgttgcggaagaaacaaaagcaaagaagagttagggaatgaattcttcgatcaactagtg 6265408  T
Q  117 tccatttcatttttccaacaatca 140  Q
    || || ||||||||||||||||||    
T  6265407 tcaatgtcatttttccaacaatca 6265384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 13270759 - 13270889
Alignment:
Q  4 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctt 103  Q
    ||||||| | ||||| ||| |||||||||||||||||| ||||||||||  ||||     ||| || ||||| ||||||||||||||||| | |||||||    
T  13270759 agtttgaaaaggatggattaatcaagctttggatggcacaaggtttgct--aaagg----gaatagccaaaaatgaagaagagttgggtaataaattctt 13270852  T
Q  104 tgatgatctagagtccatttcatttttccaacaatca 140  Q
      ||||||||| ||| ||||| |||||||||||||||    
T  13270853 caatgatctagtgtcaatttcgtttttccaacaatca 13270889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 5267847 - 5267724
Alignment:
Q  17 tgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagag 116  Q
    |||||| ||||| ||||||||||| || |||||||||||  |  || ||| ||| ||||| ||||||||| |||||| | |||| || |||||||||| |    
T  5267847 tgaattaatcaaactttggatggccgacggtttgctgaagtgccgcggaacagaaaaaagcgaagaagagctgggtaatcaattattagatgatctagtg 5267748  T
Q  117 tccatttcatttttccaacaatca 140  Q
    || |||||||||||||| ||||||    
T  5267747 tcaatttcatttttccagcaatca 5267724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 5280469 - 5280343
Alignment:
Q  14 ggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatcta 113  Q
    |||| |||| |||||||||||||||||||| || ||||||||| |||   ||  ||| || |||||| |||||||||||  |||||| |||||| ||||     
T  5280469 ggatcaattaatcaagctttggatggcagatgggttgctgaaatgttttagagcagaaaagagtgaaaaagagttgggtgatgaattttttgattatctt 5280370  T
Q  114 gagtccatttcatttttccaacaatca 140  Q
    ||||| ||||| ||| | |||||||||    
T  5280369 gagtcaatttcgtttatacaacaatca 5280343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 8454444 - 8454319
Alignment:
Q  15 gatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctag 114  Q
    |||||| |||||| |||||||||||||||||||||| ||||  ||||| ||    ||| ||||||||||||||| |||| ||||   || | |||||| |    
T  8454444 gatgaactgatcatgctttggatggcagaaggtttgttgaagtgttgcggatctaacagaagtgaagaagagtttggtaatgaaagtttcgctgatcttg 8454345  T
Q  115 agtccatttcatttttccaacaatca 140  Q
     ||| ||||| |||||||||||||||    
T  8454344 tgtcaatttcttttttccaacaatca 8454319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 6142115 - 6141979
Alignment:
Q  4 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctt 103  Q
    ||||||| | || |||||| ||||||||||||||||||||||||||  ||||   || | ||   ||||  ||   ||||||||| |||| |||||||||    
T  6142115 agtttgagaagggtgaattaatcaagctttggatggcagaaggtttcttgaaccatttcagagttgacagtagcatagaagagttaggtaatgaattctt 6142016  T
Q  104 tgatgatctagagtccatttcatttttccaacaatca 140  Q
     ||| |||||| ||| || ||||||||||||||||||    
T  6142015 cgattatctagtgtcaatatcatttttccaacaatca 6141979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 6245116 - 6244986
Alignment:
Q  4 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctt 103  Q
    ||||||| | ||||| ||| ||||| ||||||||||||||||||||| |  ||||     ||| || ||||  ||||||||||||||||| | |||||||    
T  6245116 agtttgaaaaggatggattaatcaaactttggatggcagaaggtttgat--aaagg----gaatagccaaagatgaagaagagttgggtaataaattctt 6245023  T
Q  104 tgatgatctagagtccatttcatttttccaacaatca 140  Q
      ||||||||| ||| || || |||||||||||||||    
T  6245022 caatgatctagtgtcaatgtcgtttttccaacaatca 6244986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 6882307 - 6882197
Alignment:
Q  30 ctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagagtccatttcatttt 129  Q
    ||||||||||||||||||||| ||||  ||  |  |||||||||||| ||| ||||||| |||| |||||||||  || || | | ||| || || ||||    
T  6882307 ctttggatggcagaaggtttgttgaagtgtcacaaaagagacaaaagcgaacaagagttaggtaatgaattcttcaatcatttggtgtcaatatcttttt 6882208  T
Q  130 tccaacaatca 140  Q
    |||||||||||    
T  6882207 tccaacaatca 6882197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 6259025 - 6258977
Alignment:
Q  4 agtttgacagggatgaattgatcaagctttggatggcagaaggtttgct 52  Q
    ||||||| | || |||||| |||||||||||||||||| ||||||||||    
T  6259025 agtttgaaaagggtgaattaatcaagctttggatggcaaaaggtttgct 6258977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 8569343 - 8569403
Alignment:
Q  165 atgcacgatcttgtcaatgatttgttaaaatcagagtcccaagagttttgcttacaaattg 225  Q
    ||||| |||||||| |||||||||  ||||||||| || | ||| ||||||||||||||||    
T  8569343 atgcatgatcttgttaatgatttggcaaaatcagaatctcgagaattttgcttacaaattg 8569403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 6573534 - 6573659
Alignment:
Q  15 gatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctag 114  Q
    |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  6573534 gatgaattgatcaacctttggatggctgaaggtttgctgaaatgttgcggaagagacaaaagtgaacaagagttgggtaatgaattcttggatgatctag 6573633  T
Q  115 agtccatttcatttttccaacaatca 140  Q
    ||||||||||||||||||||||||||    
T  6573634 agtccatttcatttttccaacaatca 6573659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 6573689 - 6573750
Alignment:
Q  164 catgcacgatcttgtcaatgatttgttaaaatcagagtcccaagagttttgcttacaaattg 225  Q
    |||||| |||||||| ||||||||    ||||||||||||||| | ||||||||||||||||    
T  6573689 catgcatgatcttgtaaatgatttagctaaatcagagtcccaaaaattttgcttacaaattg 6573750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 7721 - 7841
Alignment:
Q  20 attgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctagagtcc 119  Q
    |||||||||||||||||||| |||||||||||||||  ||||| ||  ||||||||||||||||||||| || | |||| | || | |||||| |||||     
T  7721 attgatcaagctttggatgggagaaggtttgctgaagtgttgcggatcagacaaaagtgaagaagagtttggcaatgaaattttcggtgatcttgagtca 7820  T
Q  120 atttcatttttccaacaatca 140  Q
    |||||||||||||||||||||    
T  7821 atttcatttttccaacaatca 7841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 25242374 - 25242493
Alignment:
Q  17 tgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgat-ctaga 115  Q
    |||||| |||||||||||||| ||| |||| ||||||||  ||||  ||| | ||||||||||||||||||||||||  || || || ||||||  ||||    
T  25242374 tgaattaatcaagctttggatagcataaggcttgctgaagtgttgtagaacaaacaaaagtgaagaagagttgggtagagagttattcgatgataataga 25242473  T
Q  116 gtccatttcatttttccaac 135  Q
    ||| ||||||||||||||||    
T  25242474 gtcgatttcatttttccaac 25242493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 35140583 - 35140708
Alignment:
Q  15 gatgaattgatcaagctttggatggcagaaggtttgctgaaaagttgccgaagagacaaaagtgaagaagagttgggtactgaattctttgatgatctag 114  Q
    |||| ||| ||||||||||||||| ||||||||||||| ||  ||||   || || ||||| ||||||||||||||||| | |||||||  |||||||||    
T  35140583 gatggattaatcaagctttggatgacagaaggtttgctaaagggttgggaaatagccaaaaatgaagaagagttgggtaataaattcttcaatgatctag 35140682  T
Q  115 agtccatttcatttttccaacaatca 140  Q
     ||| || || ||||||||| |||||    
T  35140683 tgtcaatgtcgtttttccaaaaatca 35140708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 253 - 313
Alignment:
Q  165 atgcacgatcttgtcaatgatttgttaaaatcagagtcccaagagttttgcttacaaattg 225  Q
    ||||| |||||||| |||||||||  |||||||||||| | | | ||||||||||||||||    
T  253 atgcatgatcttgttaatgatttggcaaaatcagagtctcgacaattttgcttacaaattg 313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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