View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17965_high_8 (Length: 240)
Name: NF17965_high_8
Description: NF17965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17965_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11826681 - 11826905
Alignment:
| Q |
1 |
tagctattctatatatttgagatctttatatgcgatacataaattgccaaaggatgattagttgcccttccatataggttaagatcttgagggttttcag |
100 |
Q |
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| T |
11826681 |
tagctattctatatatttgagatctttatatgcgatacataaattgccaaaggataattagttgcccttccatataggttaagatcttgagggttttcag |
11826780 |
T |
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| Q |
101 |
ctatgacctaactagtagttaggtctaagatgaaccattttgcctttagtttcgcttctttacttccatcgtgttgatgcaagcactttcgatgatgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11826781 |
ctatgacctaactagtagttaggtctaagatgaaccattttgcctttagtttcgcttctttacttccatcgtgttgatgcaaacactttcgatgatgaga |
11826880 |
T |
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| Q |
201 |
tcttaactggcttgggactcatttt |
225 |
Q |
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| T |
11826881 |
tcttaactggcttgggactcatttt |
11826905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 11840528 - 11840686
Alignment:
| Q |
18 |
tgagatctttatatgcgatacataaattgccaaaggatgattagttgcccttccatataggttaagatcttgagggt---tttcagctatgacctaacta |
114 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| | |||||||| || |
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| T |
11840528 |
tgagatctttatataggatacataaattgccaaaggatcattggttgcccttccttataggttaagatcttgagggtttctttcaaccatgacctagctt |
11840627 |
T |
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| Q |
115 |
gtagttaggtctaa---gatgaaccattttgcctttagtttcgcttctttacttccatc |
170 |
Q |
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| T |
11840628 |
gtagctaggtctaacttgaagcactattttgccttcaattttgcttctttgcttccatc |
11840686 |
T |
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