View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17965_low_1 (Length: 617)
Name: NF17965_low_1
Description: NF17965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17965_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 58 - 608
Target Start/End: Complemental strand, 46266716 - 46266166
Alignment:
| Q |
58 |
tttctttttaatgtactctaacaaacactagatcaaaagtttacattcttgtgaagtgtaatcttctttctagtacatatatggaatcctataattaata |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266716 |
tttctttttaatgtactctaacaaacactagatcaaaagtttacattcttgtgaagtgtaatcttctttctagtacatatatggaatcctataattaata |
46266617 |
T |
|
| Q |
158 |
tttcacttcattcaaccgcatatcactaattcaaacatatctgtaaggataaaacacaaagtagggtaaatttctattgaatcttagctccaacccatat |
257 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266616 |
tttcacttcattcaacctcatatcactaattcaaacatatctgtaaggataaaacacaaagtagggtaaatttctattgaatcttagctccaacccatat |
46266517 |
T |
|
| Q |
258 |
catatctgtcccaattagaattgtttatactaaggtttgttcattagcatgtttcactttttcctcttgcttgcgtgttagttaggttagtttgtttttc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266516 |
catatctgtcccaattagaattgtttatactaaggtttgttcattagcatgtttcactttttcctcttgcttgcgtgttagttaggttagtttgtttttc |
46266417 |
T |
|
| Q |
358 |
tgttaagtttgttatctttacatgtttcattctagttagtaattttcagctcaagtccactttgtatctatatgtgatagaattattgtcagttatttaa |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266416 |
tgttaagtttgttatctttacatgtttcattctagttagtaattttcagctcaagtccactttgtatctatatgtgatagaattattgtcagttatttaa |
46266317 |
T |
|
| Q |
458 |
gtagagtgtaagcaaaaaactacaattttcacctataaaatagaatttgataaacacaaatcaagataatccaacaagaaaagttattcatactgattca |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266316 |
gtagagtgtaagcaaaaaactacaattttcacctataaaatagaatttgataaacacaaatcaagataatccaacaagaaaagttattcatactgattca |
46266217 |
T |
|
| Q |
558 |
attcacagtgcgtcagaattaagagattattaattatatacttagtataat |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266216 |
attcacagtgcgtcagaattaagagattattaattatatacttagtataat |
46266166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 454 - 608
Target Start/End: Original strand, 46022953 - 46023107
Alignment:
| Q |
454 |
ttaagtagagtgtaagcaaaaaactacaattttcacctataaaatagaatttgataaacacaaatcaagataatccaacaagaaaagttattcatactga |
553 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46022953 |
ttaagtagagtgcaagcaaaaaactacaattttcacctataaaatagaatttgataaacacaaatcaagataatccaacaagaaaagttattcatactga |
46023052 |
T |
|
| Q |
554 |
ttcaattcacagtgcgtcagaattaagagattattaattatatacttagtataat |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46023053 |
ttcaattcacagtgcgtcagaattaagagattattaattatatacttagtataat |
46023107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 46022865 - 46022953
Alignment:
| Q |
342 |
ggttagtttgtttttctgtta----agtttgttatctttacatgtttcattctagttagtaattttcagctcaagtccactttgtatct |
426 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46022865 |
ggttagtttgtttttctgttaggttagtttgttatccttacatgtttcattctagttagtaattttcagctcaagtccactttgtatct |
46022953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University