View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17965_low_10 (Length: 226)
Name: NF17965_low_10
Description: NF17965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17965_low_10 |
 |  |
|
| [»] chr3 (25 HSPs) |
 |  |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8471583 - 8471358
Alignment:
| Q |
1 |
taagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatgaatgggaaaagatactagaggctgacatg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| |||| ||||| ||||| ||||||| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
8471583 |
taagtgtggagggctgcctttagctgtgaaaacattgggaaaccttttgcggaaaaaatattctcaacacgaatgggataagatactagaggctgacatg |
8471484 |
T |
 |
| Q |
101 |
tggcggttaactgatgatgatagtaacattaactcgacattgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctcta |
200 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8471483 |
tggcggttagctgatggtgacagtaacattaactcggcattgagattgagttaccataacctcccttctaatctgaagcgctgttttgcctactgctcta |
8471384 |
T |
 |
| Q |
201 |
tatttcctaagggttttaagtttgac |
226 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
8471383 |
tatttcctaagggttttgagtttgac |
8471358 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6838908 - 6839139
Alignment:
| Q |
1 |
taagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatgaatgggaaaagatactagaggctgacatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838908 |
taagtgtggagggttgcctttagctgtgaaaacattggggaacctcttgcggaaaaaattctctaaacatgaatgggaaaagatactagaggctgacatg |
6839007 |
T |
 |
| Q |
101 |
tggcggttaac------tgatgatgatagtaacattaactcgacattgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctact |
194 |
Q |
| |
|
||||| ||| | ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |
|
|
| T |
6839008 |
tggcgcttagctgatggtgatggtgatagtaacattaactcggctttgagattgagttaccataacctcccttccagtttgaaacgctgttttgcctact |
6839107 |
T |
 |
| Q |
195 |
gctctatatttcctaagggttttaagtttgac |
226 |
Q |
| |
|
| ||| ||||||||| ||||||| |||||||| |
|
|
| T |
6839108 |
gttctgtatttcctaggggttttgagtttgac |
6839139 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 5268078 - 5267892
Alignment:
| Q |
1 |
taagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatgaatgggaaaagatactagaggctgacatg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| || |||||||| | ||||||| ||||||||||||||| |||||| | ||| | || ||| |
|
|
| T |
5268078 |
taagtgtggagggttacctttagctgtaaaaactttgggaaatctcttgcgaagaaaattctctcaacatgaatgggttaagatattggagacagatatg |
5267979 |
T |
 |
| Q |
101 |
tggcggttaactgatgatgatagtaacattaactcgacattgagattgagttaccataacctcccttcgaatctgaagcgctgtttt |
187 |
Q |
| |
|
||||| ||| | || | ||| | ||||||||| || | ||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
5267978 |
tggcgtttatcagaaggtgacattaacattaattcagtactgagattgagttaccatcatctcccttccaatctgaagcgctgtttt |
5267892 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 5298752 - 5298567
Alignment:
| Q |
2 |
aagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatgaatgggaaaagatactagaggctgacatgt |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || |||| || |||||||| | ||||||| |||||| |||||||| |||||| | ||| | || ||| |
|
|
| T |
5298752 |
aagtgtggagggttgcctctagctgtaaaagcattggggaatctcttgcgaagaaaattctctcaacgtgaatgggttaagatattggagacagatctgt |
5298653 |
T |
 |
| Q |
102 |
ggcggttaactgatgatgatagtaacattaactcgacattgagattgagttaccataacctcccttcgaatctgaagcgctgtttt |
187 |
Q |
| |
|
|| | ||| | || | ||| |||||||||||||| ||||| ||||||| |||| | |||||||| ||||||||||| |||||| |
|
|
| T |
5298652 |
ggtgtttatcagagggtgagagtaacattaactcagttttgaggttgagtttccatcatctcccttcaaatctgaagcgttgtttt |
5298567 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 6168791 - 6168714
Alignment:
| Q |
148 |
gagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggttttaagtttga |
225 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| |
|
|
| T |
6168791 |
gagttaccttaacctcccttcaaatctgaagcattgttttgcatattgttctatatttcccaagggttataagtttga |
6168714 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 6520310 - 6520386
Alignment:
| Q |
139 |
attgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggtt |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || || ||||| ||||| ||||||| |
|
|
| T |
6520310 |
attgagattgagttaccataatctcccttccaatctaaagcgttgttttgcatattgttctatttttcccaagggtt |
6520386 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 6591475 - 6591547
Alignment:
| Q |
141 |
tgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaaggg |
213 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||||| |||||||| || || ||||||||||| ||||| |
|
|
| T |
6591475 |
tgagattgagttaccttaacctcccatccaatctgaagcgttgttttgcttattgttctatatttcccaaggg |
6591547 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 6882411 - 6882339
Alignment:
| Q |
141 |
tgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaaggg |
213 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||||||| |||||||| || || ||||||||||| ||||| |
|
|
| T |
6882411 |
tgagattgagttaccttatcctcccttccaatctgaagcgttgttttgcttattgttctatatttcccaaggg |
6882339 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 7749909 - 7749837
Alignment:
| Q |
141 |
tgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaaggg |
213 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||| |||||||| || || ||||||||||| ||||| |
|
|
| T |
7749909 |
tgagattgaattaccttaacctcccttccaatctgaagcgttgttttgcttattgttctatatttccaaaggg |
7749837 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 8569093 - 8569169
Alignment:
| Q |
139 |
attgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggtt |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| || || || ||||| ||||||| |
|
|
| T |
8569093 |
attgagattgagttaccataatctcccttccaatctcaagcgttgttttgcctattgttcaatttttcccaagggtt |
8569169 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 8589748 - 8589677
Alignment:
| Q |
1 |
taagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatga |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | |||||||| | ||| || |||||||||| |
|
|
| T |
8589748 |
taagtgtggagggttgcctttagctgtaaaatcaatgggccaactcttgcgaagaaatttttctcaacatga |
8589677 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 6245188 - 6245110
Alignment:
| Q |
147 |
tgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggttttaagtttga |
225 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||||||| || || ||||||||||| ||||||| | ||||||| |
|
|
| T |
6245188 |
tgagttaccttaacctcccttccaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttga |
6245110 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 6259104 - 6259019
Alignment:
| Q |
140 |
ttgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggttttaagtttga |
225 |
Q |
| |
|
|||||| ||||||||| || ||||||||| |||||||||| |||||||| || || ||||||||||| ||||||| | ||||||| |
|
|
| T |
6259104 |
ttgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttga |
6259019 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 7587756 - 7587680
Alignment:
| Q |
139 |
attgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggtt |
215 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||| ||||| |||||||||| || || |||||||| ||||||| |
|
|
| T |
7587756 |
attgagattgagttaccataatctcccatccaatctaaagcgttgttttgccttttgttcaatatttcccaagggtt |
7587680 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 6736008 - 6735818
Alignment:
| Q |
2 |
aagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatgaatgggaaaagatactagaggctgacatgt |
101 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || ||||| | || |||||||||||| | || ||||||||||| |||||| | ||| |||| |||| |
|
|
| T |
6736008 |
aagtgtggagggttgcctctagctataaaatcattgggccaacttttgcgtaaaaaactttctgaacatgaatggattaagatattggagactgatatgt |
6735909 |
T |
 |
| Q |
102 |
ggcggttaactgatgatgatagtaacattaactcgacattgagattgagttaccataacctcccttcgaatctgaagcgctgttttgccta |
192 |
Q |
| |
|
|||| ||| | |||| || ||||||||||| | | ||||||||||||||||| ||||| || |||| ||||| || |||||||| |
|
|
| T |
6735908 |
ggcgtttatcagatggggaccacaacattaactcagtactaagattgagttaccataatctcccatcagatctaaagcgttgctttgccta |
6735818 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 6947148 - 6947074
Alignment:
| Q |
141 |
tgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggtt |
215 |
Q |
| |
|
|||||||||||||||| || || ||||| |||| |||||| ||||||||||| ||||| || ||||| ||||||| |
|
|
| T |
6947148 |
tgagattgagttaccacaatcttccttccaatcggaagcgttgttttgcctattgctccatttttcccaagggtt |
6947074 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 5250190 - 5249977
Alignment:
| Q |
2 |
aagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatgaatgggaaaagatactagaggctgacatgt |
101 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| || |||||||| | ||| || |||||| ||| |||| |||||| | ||| | || |||| |
|
|
| T |
5250190 |
aagtgtggagggttgccattagctgtaaaaactttgggaaatctcttgcgaagaaagttttctcaacgtgattgggttaagatattggagacagatatgt |
5250091 |
T |
 |
| Q |
102 |
ggcggttaactgatgatgatagtaacattaactcgacattgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctat |
201 |
Q |
| |
|
|||| ||| | || | || ||||||||||| || | ||||||||||||||||| |||||||| | ||| ||||| || ||| | || || || || |
|
|
| T |
5250090 |
ggcgtttatcagagggcgagagtaacattaattcagtactgagattgagttaccattgtctcccttctattcttaagcgttgcttttcttattgttccat |
5249991 |
T |
 |
| Q |
202 |
atttcctaagggtt |
215 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
5249990 |
atttcctaaaggtt |
5249977 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4388950 - 4389026
Alignment:
| Q |
1 |
taagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatgaatggg |
77 |
Q |
| |
|
|||||||| |||||| || |||||||||||||| |||| || |||||||| | ||||||| |||||| |||||||| |
|
|
| T |
4388950 |
taagtgtgtagggtttccattagctgtaaaaacgttgggaaatctcttgcgaagaaaattctctcaacgtgaatggg |
4389026 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 8568956 - 8569004
Alignment:
| Q |
2 |
aagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgc |
50 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| || ||||||| |
|
|
| T |
8568956 |
aagtgtggagggttgcctttagctgtgaaaacattggggaatctcttgc |
8569004 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 13270681 - 13270765
Alignment:
| Q |
141 |
tgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggttttaagtttga |
225 |
Q |
| |
|
||||| ||||||||| || ||| ||||| |||||||||| |||||||| || || ||||||||||| ||||||| | ||||||| |
|
|
| T |
13270681 |
tgagaatgagttaccttagcctaccttccaatctgaagcattgttttgcatattgttctatatttcccaagggttatgagtttga |
13270765 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 6448937 - 6449011
Alignment:
| Q |
141 |
tgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggtt |
215 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||| ||| | || |||||||| ||||| || || |||||||||| |
|
|
| T |
6448937 |
tgagattgagttaccataatctcccttccagtctaaagtgttgctttgcctattgctccattttccctaagggtt |
6449011 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 6722218 - 6722288
Alignment:
| Q |
143 |
agattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaaggg |
213 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||||| |||||||| || || ||||||||||| ||||| |
|
|
| T |
6722218 |
agattgagtttctttaacctcccttccgatctgaagcgttgttttgcttattgttctatatttcccaaggg |
6722288 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 6899997 - 6899923
Alignment:
| Q |
139 |
attgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaaggg |
213 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||| ||||||| || || ||| ||||||| ||||| |
|
|
| T |
6899997 |
attgaaattgagttaccttaacctcccttccaatctgaagcattgttttgattattgttctttatttccaaaggg |
6899923 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 6947287 - 6947213
Alignment:
| Q |
2 |
aagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatgaatgg |
76 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||| | || ||||| ||||| || ||||| |||||||| |
|
|
| T |
6947287 |
aagtgtggagggttgcctttagctataaaatcactgggccaacttttgcgaaaaaagttttctcaagatgaatgg |
6947213 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 8454533 - 8454460
Alignment:
| Q |
141 |
tgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggt |
214 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||| || ||| |||| || || || ||||| |||||| |
|
|
| T |
8454533 |
tgagattgagttaccataatctcccttctaatctaaagcgttgcttttcctattgttccatttttcccaagggt |
8454460 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 25242168 - 25242243
Alignment:
| Q |
2 |
aagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaacatgaatggg |
77 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||| || |||||||| | ||||||| ||||||||||||||| |
|
|
| T |
25242168 |
aagtgtggagcgttgcctttagctgtaaaaacaacggggaatctcttgcgaagaaaattctctcaacatgaatggg |
25242243 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 25242280 - 25242357
Alignment:
| Q |
138 |
cattgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggtt |
215 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||| |||||| ||||| || ||||||||||| |||| |
|
|
| T |
25242280 |
cattaagattgagttaccataatctcccttccaatctgaagcgttgttttagttactgttccatatttcctaaaggtt |
25242357 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 6573432 - 6573529
Alignment:
| Q |
128 |
attaactcgacattgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggttttaagtttga |
225 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |||||||| ||||| ||||| |||||||| || || || |||||||| ||||||| ||| ||||| |
|
|
| T |
6573432 |
attaactcggtattgagattgagttatcataatctcccttccaatctaaagcgttgttttgcatattgttccatatttcccaagggttataaatttga |
6573529 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 35140494 - 35140578
Alignment:
| Q |
141 |
tgagattgagttaccataacctcccttcgaatctgaagcgctgttttgcctactgctctatatttcctaagggttttaagtttga |
225 |
Q |
| |
|
||||| ||||||||| || ||||||||| |||||||||| |||||||| || | ||||||||||| ||||||| | ||||||| |
|
|
| T |
35140494 |
tgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaagggttatgagtttga |
35140578 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University