View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17965_low_2 (Length: 384)

Name: NF17965_low_2
Description: NF17965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17965_low_2
NF17965_low_2
[»] chr1 (3 HSPs)
chr1 (318-368)||(23809549-23809599)
chr1 (124-195)||(41419026-41419097)
chr1 (118-152)||(34970744-34970778)
[»] chr7 (3 HSPs)
chr7 (51-94)||(33600228-33600271)
chr7 (118-152)||(3215344-3215378)
chr7 (118-152)||(19626046-19626080)
[»] chr2 (1 HSPs)
chr2 (122-178)||(23701581-23701637)
[»] chr4 (1 HSPs)
chr4 (124-197)||(41809245-41809317)


Alignment Details
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 23809549 - 23809599
Alignment:
Q  318 agttagttttaagctatagcttaagaatttgccgggtaattgatatttatt 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23809549 agttagttttaagctatagcttaagaatttgccgggtaattgatatttatt 23809599  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 41419026 - 41419097
Alignment:
Q  124 atattgattgaattgagttgagaattcaatctgtcgatgcttttttaaataaagggtaagattaaaataaaa 195  Q
    ||||||||||||||||||||||||||||   | | ||| | ||||||||||||||||||  || ||||||||    
T  41419026 atattgattgaattgagttgagaattcagcatattgattcctttttaaataaagggtaaatttgaaataaaa 41419097  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 34970744 - 34970778
Alignment:
Q  118 aactatatattgattgaattgagttgagaattcaa 152  Q
    ||||||||||||||||||||||||||| |||||||    
T  34970744 aactatatattgattgaattgagttgacaattcaa 34970778  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 33600271 - 33600228
Alignment:
Q  51 gtttgttttaatacttaattttagtcttggattgtttatgatct 94  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  33600271 gtttgttttaaaacttaattttggtcttggattgtttatgatct 33600228  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 3215378 - 3215344
Alignment:
Q  118 aactatatattgattgaattgagttgagaattcaa 152  Q
    ||||||||||||||||||||||||||| |||||||    
T  3215378 aactatatattgattgaattgagttgacaattcaa 3215344  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 19626046 - 19626080
Alignment:
Q  118 aactatatattgattgaattgagttgagaattcaa 152  Q
    ||||| |||||||||||||||||||||||||||||    
T  19626046 aactacatattgattgaattgagttgagaattcaa 19626080  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 23701581 - 23701637
Alignment:
Q  122 atatattgattgaattgagttgagaattcaatctgtcgatgcttttttaaataaagg 178  Q
    ||||||||||| |||||||||||||||||||  | | |||| |||||||||||||||    
T  23701581 atatattgatttaattgagttgagaattcaacatattgatgtttttttaaataaagg 23701637  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 41809317 - 41809245
Alignment:
Q  124 atattgattgaattgagttgagaattcaatctgtcgatgcttttttaaataaagggtaagattaaaataaaata 197  Q
    ||||||||||||||||||||| ||||| || | | || | ||||||||||||||||||| |||  |||||||||    
T  41809317 atattgattgaattgagttgaaaattctatttattgacg-ttttttaaataaagggtaaaattggaataaaata 41809245  T

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