View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17965_low_4 (Length: 314)
Name: NF17965_low_4
Description: NF17965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17965_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 29 - 295
Target Start/End: Original strand, 29032515 - 29032781
Alignment:
| Q |
29 |
cttcctcttcctcttccacttctgcaaccaacaaaacaggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatgcagccgagat |
128 |
Q |
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| T |
29032515 |
cttcctcttcctcttccacttctgcaaccaacaaaactggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatgcagccgagat |
29032614 |
T |
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| Q |
129 |
aagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatccatgcgcggt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032615 |
aagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatccatgcgcggt |
29032714 |
T |
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| Q |
229 |
tccaaagctcgaaccaatttcttctatcccgaaaccaccgaacaaaaccttcttcatccatgccata |
295 |
Q |
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| T |
29032715 |
tccaaagctcgaaccaatttcttctatcccgaaacaaccgaacaaaaccttcttcatccattccata |
29032781 |
T |
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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 14158570 - 14158661
Alignment:
| Q |
82 |
taccgtggagtccgacgccgaccatggggccgttatgcagccgagataagagacccacattccaaagaacgccgctggctcggaactttcga |
173 |
Q |
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| T |
14158570 |
taccgcggagttcgccgcagaccatggggccgctatgcagctgagataagagaccctcagtccaaagaacgccgctggcttggaaccttcga |
14158661 |
T |
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