View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17965_low_5 (Length: 288)
Name: NF17965_low_5
Description: NF17965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17965_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 46958989 - 46959179
Alignment:
| Q |
78 |
tagggtagaatacacctttgtatagtgagtgatccaaggtaactaatctaacaaacttccacctaatccataactaacttctaattgccttaaaccaaca |
177 |
Q |
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| T |
46958989 |
tagggtagaatacacctttgtatagtgagtgatccaaggtaactaatctaacaaacttccacctaat-cataactaacttctaattgccttaaaccaaca |
46959087 |
T |
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| Q |
178 |
tctaacatgaagggttcatctactcattccatcccattgtcattacaaatcataattaatatcaggatttgtctctaacaagacattctgtc |
269 |
Q |
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| T |
46959088 |
tctaacatgaagggttcatctgtacagaatatcccattgtcattacaaatcataattaatatcaggatttgtctctaacaagacattctgtc |
46959179 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 44522972 - 44522933
Alignment:
| Q |
231 |
aattaatatcaggatttgtctctaacaagacattctgtct |
270 |
Q |
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| T |
44522972 |
aattaatagcaggatttggctctaacaagacattctgtct |
44522933 |
T |
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