View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17965_low_6 (Length: 250)
Name: NF17965_low_6
Description: NF17965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17965_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 11826417 - 11826656
Alignment:
| Q |
11 |
cacagaaaaagggaatataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactgacattttttatg |
110 |
Q |
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| T |
11826417 |
cacagaaaaagggaatataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactaacattttttatg |
11826516 |
T |
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| Q |
111 |
ccaaaatgtacaacagcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaacgacacgta |
210 |
Q |
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| T |
11826517 |
ccaaaatgtacaacagcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaatttcaacatatataaagcaatcaacgacacata |
11826616 |
T |
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| Q |
211 |
tatatataacagcaaaataacaaagtgcactaattaatca |
250 |
Q |
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| T |
11826617 |
tatatataacagcaaaataacaaagtgcactaattaatca |
11826656 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 11840334 - 11840402
Alignment:
| Q |
143 |
gaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaacgacacgtatatat |
215 |
Q |
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| T |
11840334 |
gaagtagaaatatttcattgatcga----tgaaaatttcaacatatataaagcaatcaacagcacatatatat |
11840402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 35040395 - 35040359
Alignment:
| Q |
55 |
gtttgatccccaccctcaatataaaaactaacaatac |
91 |
Q |
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| T |
35040395 |
gtttgatccccaccctcagcataaaaactaacaatac |
35040359 |
T |
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