View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17966_high_1 (Length: 269)
Name: NF17966_high_1
Description: NF17966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17966_high_1 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 2838707 - 2838470
Alignment:
| Q |
12 |
gagaagaaatatatggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2838707 |
gagaagaaatatatggttggttattggagggtgcagctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagct |
2838608 |
T |
|
| Q |
112 |
agtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838607 |
agtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatg |
2838508 |
T |
|
| Q |
212 |
gagcaattttgtcggggaactgaagaccctcttccaca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838507 |
gagcaattttgtcggggaactgaagaccctcttccaca |
2838470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 5412930 - 5413151
Alignment:
| Q |
25 |
tggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagc |
124 |
Q |
| |
|
||||||||||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5412930 |
tggttggttattggatggtgcagcggaacgtacagtcatatcagtggtaggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaagc |
5413029 |
T |
|
| Q |
125 |
caaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtc |
224 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5413030 |
caaaaggtatcagcacactttgattgttgtgcttgcgtaacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtc |
5413129 |
T |
|
| Q |
225 |
ggggaactgaagaccctcttcc |
246 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
5413130 |
ggggaactgaagactctcttcc |
5413151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 2769100 - 2769331
Alignment:
| Q |
12 |
gagaagaaatatatggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagct |
111 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2769100 |
gagaagaattatttggttggttattggagggtgcagctaagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaaact |
2769199 |
T |
|
| Q |
112 |
agtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatg |
211 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||| |
|
|
| T |
2769200 |
agtttatgacagccaaaaggtaactgcaaactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagagggttactgataaaaatgatg |
2769299 |
T |
|
| Q |
212 |
gagcaattttgtcggggaactgaagaccctct |
243 |
Q |
| |
|
||||||||||||| || ||||||||| ||||| |
|
|
| T |
2769300 |
gagcaattttgtcaggaaactgaagaacctct |
2769331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 25 - 248
Target Start/End: Complemental strand, 2855904 - 2855681
Alignment:
| Q |
25 |
tggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagc |
124 |
Q |
| |
|
||||||||||||||| ||| | |||||||| ||| || |||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||| ||| |
|
|
| T |
2855904 |
tggttggttattggaaggtatatctgagcgcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgccaagctaatttttgacagc |
2855805 |
T |
|
| Q |
125 |
caaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtc |
224 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2855804 |
caaaaggtaacaacaaactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtc |
2855705 |
T |
|
| Q |
225 |
ggggaactgaagaccctcttccac |
248 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2855704 |
ggggaactgaagaccctcttccac |
2855681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 2807298 - 2807533
Alignment:
| Q |
12 |
gagaagaaatatatggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagct |
111 |
Q |
| |
|
|||||||||| | || ||||||||||||||||| || ||||||||| || || || |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2807298 |
gagaagaaatgtctgtttggttattggagggtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagct |
2807397 |
T |
|
| Q |
112 |
agtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatg |
211 |
Q |
| |
|
||||||||| ||||||| ||||||| || ||||||||||| ||||||| || |||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
2807398 |
agtttttgatagccaaacggtaacaacacactttgattgtcgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgataaacatgatg |
2807497 |
T |
|
| Q |
212 |
gagcaattttgtcggggaactgaagaccctcttcca |
247 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2807498 |
gagcaattttgtcaggaaactgaagaccctcttcca |
2807533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 2749039 - 2749259
Alignment:
| Q |
25 |
tggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagc |
124 |
Q |
| |
|
||||||||||||||| |||| || ||||||||| || ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2749039 |
tggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagc |
2749138 |
T |
|
| Q |
125 |
caaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtc |
224 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2749139 |
aaaaaggtatcagcacactttgattgtcgtgcttgcgtcacagtttctcaatcttacactgtgagaggtttgttgataaacatgatggagcaattctgtc |
2749238 |
T |
|
| Q |
225 |
ggggaactgaagaccctcttc |
245 |
Q |
| |
|
|| | ||| ||||| |||||| |
|
|
| T |
2749239 |
ggagtactaaagactctcttc |
2749259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 2818588 - 2818817
Alignment:
| Q |
12 |
gagaagaaatatatggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagct |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2818588 |
gagaagaactatatggttggttattggagggtgcagccgagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagct |
2818687 |
T |
|
| Q |
112 |
agtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatg |
211 |
Q |
| |
|
||||||||| ||||||||||||||| || | ||||||||| |||||| || ||||||||||||||||||||||||||| || ||||||| |||||| |
|
|
| T |
2818688 |
agtttttgacagccaaaaggtaacaacacagtttgattgtcgagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaaatgatg |
2818787 |
T |
|
| Q |
212 |
gagcaattttgtcggggaactgaagaccct |
241 |
Q |
| |
|
|||||||||| || || | ||||||||||| |
|
|
| T |
2818788 |
gagcaattttatcaggaagctgaagaccct |
2818817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 2759246 - 2759480
Alignment:
| Q |
13 |
agaagaaatatatggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagcta |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| ||| |||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
2759246 |
agaagaactatatggttggttattggagggttcagctgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagcta |
2759345 |
T |
|
| Q |
113 |
gtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatgg |
212 |
Q |
| |
|
|||||||| ||||||||||||||| || | ||||||||| | |||||| || ||||||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
2759346 |
gtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaaatgatgg |
2759445 |
T |
|
| Q |
213 |
agcaattttgtcggggaactgaagaccctcttcca |
247 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |
|
|
| T |
2759446 |
cgcaattttgtcaggaaactgaagaccctcttcca |
2759480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 2797405 - 2797624
Alignment:
| Q |
25 |
tggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagc |
124 |
Q |
| |
|
|||||||||| | ||||| ||| |||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
2797405 |
tggttggttactagagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagt |
2797504 |
T |
|
| Q |
125 |
caaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtc |
224 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||| ||||| || | ||||| |||||||||||| |||||||| |
|
|
| T |
2797505 |
caaaaggtaacaacaaaatttgattgtcgtgcttgcatcacagtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgta |
2797604 |
T |
|
| Q |
225 |
ggggaactgaagaccctctt |
244 |
Q |
| |
|
| | ||||||| ||||||| |
|
|
| T |
2797605 |
gcgaaactgaaagccctctt |
2797624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 2790411 - 2790491
Alignment:
| Q |
25 |
tggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgc |
105 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| || |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
2790411 |
tggttggttattggagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgc |
2790491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 2790493 - 2790583
Alignment:
| Q |
154 |
tgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtcggggaactgaagaccctctt |
244 |
Q |
| |
|
||||||| |||| ||||||||||||| ||| ||||| || | ||||| |||||||||||| |||||||| | | |||||||| ||||||| |
|
|
| T |
2790493 |
tgcttgcatcaccgtttctcaatcattcaccgtgagggggatattgatcaacatgatggaggaattttgtagcgaaactgaaggccctctt |
2790583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 22648590 - 22648533
Alignment:
| Q |
50 |
gagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgcca |
107 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
22648590 |
gagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgcca |
22648533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 21945676 - 21945728
Alignment:
| Q |
68 |
gtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttga |
120 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| |||||| ||||||||| |
|
|
| T |
21945676 |
gtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttga |
21945728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 6259 - 6025
Alignment:
| Q |
12 |
gagaagaaatatatggttggttattggagggtgcagttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagct |
111 |
Q |
| |
|
|||| ||| |||||||||||||||||||| || ||| ||||||||| || || ||||||||||||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
6259 |
gagaggaattatatggttggttattggagagtccagctgagcgcaccgtaatttcagtggtaggaatgggaggtatagggaaaaccactcttgccaagct |
6160 |
T |
|
| Q |
112 |
agtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatg |
211 |
Q |
| |
|
||||||||| ||||||||||||||| || | ||||||||| ||||||| || ||||||||||| ||||||| |||||||| || | |||||||||||| |
|
|
| T |
6159 |
agtttttgacagccaaaaggtaacaacacaatttgattgtcgtgcttgcatcgcagtttctcaaacatacaccgtgagagggttactcataaacatgatg |
6060 |
T |
|
| Q |
212 |
gagcaattttgtcggggaactgaagaccctcttcc |
246 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
6059 |
gagcaattttgtcgggaaactgaagaccctcttcc |
6025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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