View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17966_high_1_N (Length: 482)
Name: NF17966_high_1_N
Description: NF17966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17966_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 28536452 - 28536849
Alignment:
| Q |
1 |
gtataaagtaatgctctgaaatttcaaaaccaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgaggttgagcgtgcgaag |
100 |
Q |
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| T |
28536452 |
gtataaagtaatgctctgaaatttcaaaaccaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgacgttgagcgtgcgaag |
28536551 |
T |
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| Q |
101 |
aaagcaagaaggaagaacgacacaaaaagtttgtagatgtcatatagtactttcattctcctcaacacaatgaaacatattcaagcttgtcaaataaaaa |
200 |
Q |
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| T |
28536552 |
aacgcaagaaggaagaacgacacaaaaagtttgtagatgtcatatagtactttcattctcctcaacacaataaaacatattcaagcttgtcaaataaaaa |
28536651 |
T |
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| Q |
201 |
tttccactgaattaaccaggaaacattacgtgtttcgaaactcgatccactctactatgtataattagtaattaccatgaaagatataaggttggccgct |
300 |
Q |
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| T |
28536652 |
tttccactgaattaaccaggaaacattacgtgtttcgaaactggatccactctactatgtataattagtaattaccatgaaagatataaggttggccgct |
28536751 |
T |
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| Q |
301 |
ttgaaattccatatgaatattcaaaccaaattcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
398 |
Q |
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| T |
28536752 |
ttgaaattccatatgaatattcaaaccaaattcctgtatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
28536849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 332 - 438
Target Start/End: Original strand, 28536833 - 28536939
Alignment:
| Q |
332 |
tcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
431 |
Q |
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|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536833 |
tcctgtatattaatcattgatgaaaaaataaaaggtgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
28536932 |
T |
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| Q |
432 |
cacaggt |
438 |
Q |
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| T |
28536933 |
cacaggt |
28536939 |
T |
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