View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17966_low_1 (Length: 398)
Name: NF17966_low_1
Description: NF17966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17966_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 35178225 - 35178591
Alignment:
| Q |
16 |
gtttgaccagcagtgaaggtaactggatgcaatccaaacatgttaacatagttttagtcattcattcaacatgatttaggcttagaccttatttcaattc |
115 |
Q |
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| T |
35178225 |
gtttgaccagcagtgaaggtaactagatgcaatccaaacatgttaacatagttttagtcattcattcaacatgatttaggcttagaccttatttcaattc |
35178324 |
T |
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| Q |
116 |
cttgaacaacaagaccacccttccaaccaccacctttgacctcacaaacacctatctccacctccttatcatttcctccttcgttgaagaactctcccac |
215 |
Q |
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| T |
35178325 |
cttgaacaacaagaccacccttccaaccaccacctttgacctcacaaacacctatctccacctccttatcatttcctccttcattgaagaactctcccaa |
35178424 |
T |
|
| Q |
216 |
ttccatctccaaccacccatctgctctctccttcggatgcttctgcatatcatctacactttctattggttctactagtggtcgaagtcgagtgaatatc |
315 |
Q |
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| T |
35178425 |
ttccatctccaaccacccatctgctctctccttcggatgcttctgcatatcatctacactttctattggttctactagtggtcgaagtcgagtgaatatc |
35178524 |
T |
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| Q |
316 |
ccagtagtacggaagcgatgaacaatctggtatcttagccttcgtcctctttccacatccaagaata |
382 |
Q |
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| T |
35178525 |
ccagtagtacggaagcgatgaacaatctggtatcttagccttcgtcctctttccacatccaagaata |
35178591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 51 - 382
Target Start/End: Original strand, 35182217 - 35182560
Alignment:
| Q |
51 |
aaacatgttaacatagttttagtcattcattcaacatgatttaggcttagaccttatttcaattccttgaacaacaagaccacccttccaaccaccacct |
150 |
Q |
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| T |
35182217 |
aaacatgttaacttggttttagtcattctttcaacatgatttagtcttaggccttatttcaattccttgaacaacaagaccacccttccaaccaccacct |
35182316 |
T |
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| Q |
151 |
ttgacctcacaaacacctatctccacctccttatcatttcctccttcgttgaagaactctcccacttccatctccaaccacccatctgctctctccttcg |
250 |
Q |
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| T |
35182317 |
ttgacctcacaaacacctatgtccacctgcttatcatctcctccttcattgaagaactctcccagttccatctccaaccatccatctgctctctcctttg |
35182416 |
T |
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| Q |
251 |
gatgcttctgcatatcatctacactttctattggttctactagt------------ggtcgaagtcgagtgaatatcccagtagtacggaagcgatgaac |
338 |
Q |
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| T |
35182417 |
gatacttccgcagatcggctacactttctgtcggttcgactggtgcttctacaggagatcgaagtcgagttaatatcccagtagtgcgggagcgaggaac |
35182516 |
T |
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| Q |
339 |
aatctggtatcttagccttcgtcctctttccacatccaagaata |
382 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||| |
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| T |
35182517 |
aatctggtatcttagccttcgtcctcttcccgcatccaagaata |
35182560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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