View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17967_high_3 (Length: 353)
Name: NF17967_high_3
Description: NF17967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17967_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 48522836 - 48523165
Alignment:
| Q |
16 |
atcaaacaatgacatgattatacatgattaaattttccaccacttgcttccccgtttttctatataaagcactactcgttgcgcattaatcaaccacaaa |
115 |
Q |
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| T |
48522836 |
atcaaacaatgacatgattatacatcattaaattttccaccacttgcttccccgtttttctatataaagcactactcgttgcgcattaatcaaccacaaa |
48522935 |
T |
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| Q |
116 |
ctcatcctccaacagaaattaaccttagagctctaagc------acaaacacaaacacaatcatgcatactctctattttttcttagtactccttgctat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48522936 |
ctcatcctccaacagaaattaaccttagagctctaagcacaagcacaaacacaaacacaatcatgcatactctctattttttcttagtactccttgctat |
48523035 |
T |
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| Q |
210 |
aatacatggaattcaagcagttgattacagtgtcgccaacaatgccctctctactccaggtattactannnnnnnatagaagttatgataaaaactaatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48523036 |
aatacatggaattcaagcagttgattacagtgtcaccaacaatgccctctctactccaggtattactatttttttatagaagttatgataaaaactaatt |
48523135 |
T |
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| Q |
310 |
aatctaactactagtgtaagtaattaatgt |
339 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48523136 |
aatctaactactagtgtaagtaattaatgt |
48523165 |
T |
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