View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17967_high_5 (Length: 217)
Name: NF17967_high_5
Description: NF17967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17967_high_5 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0194 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27900099 - 27899883
Alignment:
| Q |
1 |
accaaaacaaatacagcagtgaccaaggcaaccatcgctggaaaacaaagcaaacaccgaccgaagcgccgccaaaaacagtgtcggacaaccttggaga |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||| |||||||| |
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| T |
27900099 |
accaaaacaaatacagcggtgaccaaggcaaccatcgctggaaaacaaagcaaacaccgaccaaagcgccgccaagaatagtgccggacaaacttggaga |
27900000 |
T |
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| Q |
101 |
aagctattccgcgaaaagaaataacatacacaaaacatcccataacctcaatccggcatgaaggaagcaatctgagctctataatctttagatatgaacc |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27899999 |
aagctattccgcgaaaagaaataacagacacaaaacatcccctaacctcaatccggcgtgaaggtagcaatctgagctctataatctttagatatgaacc |
27899900 |
T |
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| Q |
201 |
agatacaaagaaccaaa |
217 |
Q |
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| T |
27899899 |
aaatccaaagaaccaaa |
27899883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 35247277 - 35247064
Alignment:
| Q |
4 |
aaaacaaatacagcagtgaccaaggcaaccatcgctggaaaacaaagcaaacaccgaccgaagcgccgccaaaaacagtgtcggacaaccttggagaaag |
103 |
Q |
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|||||||| |||| ||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
35247277 |
aaaacaaaagcagcggtgaccaaggcaaccatcgtcggaaaacgaagcaaacgccgaccggagcgccgccgaaaacagtgccggacaaccttggagaaag |
35247178 |
T |
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| Q |
104 |
ctattccgcgaaaagaaataacatacacaaaacatcccataacctcaatccggcatgaaggaagcaatctgagctctataatctttagatatgaaccaga |
203 |
Q |
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|||||| |||||||| | |||| |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||| | | |
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| T |
35247177 |
ctattctgcgaaaaggcagaacagacacaaaacatcccctaacctcaatccggcgtgaaggaagcaatctgatctctatagccttcagatatgaactaaa |
35247078 |
T |
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| Q |
204 |
tacaaagaaccaaa |
217 |
Q |
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| T |
35247077 |
tccgaagaaccaaa |
35247064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 42236927 - 42237125
Alignment:
| Q |
19 |
gtgaccaaggcaaccatcgctggaaaacaaagcaaacaccgaccgaagcgccgccaaaaacagtgtcggacaaccttggagaaagctattccgcgaaaag |
118 |
Q |
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|||||||||||||||||||| ||||||| |||||||||| ||||| ||||||| | ||||||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
42236927 |
gtgaccaaggcaaccatcgccggaaaacgaagcaaacactgaccggagcgccgtcgaaaacagtgccggacaaccttggagaaagatattctgcgaaaag |
42237026 |
T |
|
| Q |
119 |
aaataacatacacaaaacatcccataacctcaatccggcatgaaggaagcaatctgagctctataatctttagatatgaaccagatacaaagaaccaaa |
217 |
Q |
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| |||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||| || ||| |||| ||||||| || |||||||||||| |
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| T |
42237027 |
gcagaacaaacacaaaacatcccctaacctcaatccggcgtgaaggaagcaatctgatctctgtagccttcagatctgaaccatatccaaagaaccaaa |
42237125 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 4767 - 4871
Alignment:
| Q |
4 |
aaaacaaatacagcagtgaccaaggcaaccatcgctggaaaacaaagcaaacaccgaccgaagcgccgccaaaaacagtgtcggacaaccttggagaaag |
103 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| | |||||||||| |||||| |
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| T |
4767 |
aaaacaaaagcagcggtgaccaaggcaaccatcgctggaaaacaaagcaaataccgactgaagcgccgccgaaaacagtg-ccgacaaccttgaagaaag |
4865 |
T |
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| Q |
104 |
ctattc |
109 |
Q |
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|||||| |
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| T |
4866 |
ctattc |
4871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 32864950 - 32865136
Alignment:
| Q |
19 |
gtgaccaaggcaaccatcgctggaaaacaaagcaaacaccgaccgaagcgccgccaaaaacagtgtcggacaaccttggagaaagctattccgcgaaaag |
118 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||||| ||||||||| |||||||||||| |||||||||| |||||||| |
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| T |
32864950 |
gtgaccaaggcaaccatcgctgaaaaacgaaacaaacaccgaccggagcgccgccgaaaacagtgtcg------------gaaagctattatgcgaaaag |
32865037 |
T |
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| Q |
119 |
aaataacatacacaaaacatcccataacctcaatccggcatgaaggaagcaatctgagctctataatctttagatatgaaccagatacaaagaaccaaa |
217 |
Q |
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| |||| |||||||| ||||| ||||||||||||||| ||||||||||||| ||| ||||||| ||| |||| ||||||| || | |||||||||| |
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| T |
32865038 |
gcagaacagacacaaaatatcccctaacctcaatccggcgtgaaggaagcaatttgatctctatagccttcagatctgaaccaaatccgaagaaccaaa |
32865136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 20490331 - 20490494
Alignment:
| Q |
34 |
atcgctggaaaacaaagcaaacaccgaccgaagcgccgccaaaaacagtgtcggacaaccttggagaaagctattccgcgaaaagaaataacatacacaa |
133 |
Q |
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||||| ||||||| |||||||||| |||| ||||||||| |||||| |||||||| ||||||||||| | ||| || || | | |||||| ||| |
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| T |
20490331 |
atcgcaggaaaactaagcaaacaca-accggagcgccgccgaaaacattgtcggacttccttggagaaaaatcttctgcaaagaagcagaacatatgcaa |
20490429 |
T |
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| Q |
134 |
aacatcccataacctcaatccggcatgaaggaagcaatctgagctctataatctttagatatgaa |
198 |
Q |
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|||| || || |||| || | |||| |||||||||| ||||||||| |||||||||||||||| |
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| T |
20490430 |
aacagcctctatcctctgtctgacatggaggaagcaatttgagctctaaaatctttagatatgaa |
20490494 |
T |
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