View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17967_low_2 (Length: 392)
Name: NF17967_low_2
Description: NF17967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17967_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 12685054 - 12684695
Alignment:
| Q |
16 |
atgaaagaccgtaccaacaatccaacaccttattcattagaaattcttgtagttccacaacttacccaagactatgctacacatcccttgtgaagcatgc |
115 |
Q |
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| T |
12685054 |
atgacagaccataccaacaatccaacaccttattcattagaaattcttgtagttccacaacttacccaagactatgctacacatccctagtgaagcatgc |
12684955 |
T |
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| Q |
116 |
cgatttcatacaaacaaatcgaatgcttttaacaggaacggccctcaacgtgacttttgcatcggcaaaatcaacctcggctttgatgtcaactctatct |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12684954 |
cgatttcatacaaacaaatcgcatgcttttaacaggaacggccctcaacgtgactcttgcatcggcaaaatcaacctcggctttgatgtcaactctatct |
12684855 |
T |
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| Q |
216 |
aaaggtcaagggttgaacccaagagaggctgcagctatgaaggattgcatcgaagtgctgagtgactccgtggatgaactacgaaggtctatcgatgaaa |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12684854 |
aaaggtcaggggttgaacccaagagaggctgcagctatgaaggattgcgtcgaagtgctgagtgactccgtggatgaactacgaaggtctatcgatgaaa |
12684755 |
T |
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| Q |
316 |
tgagtcgtcttaggacttcaaattttgagctaacaatgagtgatgtacaaacatgggtta |
375 |
Q |
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| T |
12684754 |
tgagtcgtcttaggacttcaaattttgagctaacaatgagtgatgtacaaacatgggtta |
12684695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 12696554 - 12696195
Alignment:
| Q |
16 |
atgaaagaccgtaccaacaatccaacaccttattcattagaaattcttgtagttccacaacttacccaagactatgctacacatcccttgtgaagcatgc |
115 |
Q |
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| T |
12696554 |
atgaaagaccataccaacaatccaacaccttattcattagaaattcttgtagttccacaacttacccaagactatgctacacatccctagtgaagcatgc |
12696455 |
T |
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| Q |
116 |
cgatttcatacaaacaaatcgaatgcttttaacaggaacggccctcaacgtgacttttgcatcggcaaaatcaacctcggctttgatgtcaactctatct |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12696454 |
cgatttcatacaaacaaatcaaatgcttttaacaggaacggccctcaacgtgactcttgcatcggcaaaatcaacctcggctttgatgtcaactctctct |
12696355 |
T |
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| Q |
216 |
aaaggtcaagggttgaacccaagagaggctgcagctatgaaggattgcatcgaagtgctgagtgactccgtggatgaactacgaaggtctatcgatgaaa |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12696354 |
aaaggtcagcagttgaacccaagagaggctgcagctatgaaggattgcgtcgaggtgctgagtgactccgttgatgaactacgaaggtctatcgatgaaa |
12696255 |
T |
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| Q |
316 |
tgagtcgtcttaggacttcaaattttgagctaacaatgagtgatgtacaaacatgggtta |
375 |
Q |
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| T |
12696254 |
tgagtcgtcttaggacttcaaattttgagataacaatgagtgatgtacaaacatgggtta |
12696195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 12711172 - 12710816
Alignment:
| Q |
17 |
tgaaagaccgtaccaacaatccaacaccttattcattagaaattcttgtagttccacaacttacccaagactatgctacacatcccttgtgaagcatgcc |
116 |
Q |
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||||||||| ||||||||| | ||||| |||||||||| ||||||||| || || |||||||| ||||||||||||||||| ||||| |||||||| || |
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| T |
12711172 |
tgaaagaccataccaacaagcaaacacattattcattaaaaattcttgcagctctacaacttatccaagactatgctacacctccctagtgaagcacgct |
12711073 |
T |
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| Q |
117 |
gatttcatacaaacaaatcgaatgcttttaacaggaacggccctcaacgtgacttttgcatcggcaaaatcaacctcggctttgatgtcaactctatcta |
216 |
Q |
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|||| ||| ||||| |||| ||||||||||| | |||||||| ||||||||| |||| || || |||||||| |||||| |||| |||||||| || | |
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| T |
12711072 |
gattccattcaaacgaatcacgtgcttttaacatgtacggccctaaacgtgactcttgcgtccgcgaaatcaacatcggctatgatatcaactctctcaa |
12710973 |
T |
|
| Q |
217 |
aaggtcaagggttgaacccaagagaggctgcagctatgaaggattgcatcgaagtgctgagtgactccgtggatgaactacgaaggtctatcgatgaaat |
316 |
Q |
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|| | || ||| |||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12710972 |
aaagccaggggctgaagccaagagaggctgcagctatgaaggattgcgtcgaagagctgagtgactccgtggatgaactacgaaggtctatcggtgaaat |
12710873 |
T |
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| Q |
317 |
gagtcgtcttaggacttcaaattttgagctaacaatgagtgatgtacaaacatgggt |
373 |
Q |
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|||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
12710872 |
gagtcgccttaggacttcaaatttcgagttaacaatgagtgatgtacaaacttgggt |
12710816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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