View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17967_low_5 (Length: 326)

Name: NF17967_low_5
Description: NF17967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17967_low_5
NF17967_low_5
[»] chr6 (13 HSPs)
chr6 (18-291)||(26659619-26659892)
chr6 (18-291)||(26765590-26765863)
chr6 (225-286)||(26659561-26659622)
chr6 (225-286)||(26765532-26765593)
chr6 (238-287)||(28782748-28782797)
chr6 (225-281)||(27424725-27424781)
chr6 (131-217)||(28790034-28790122)
chr6 (231-286)||(27600863-27600918)
chr6 (225-287)||(27607662-27607724)
chr6 (239-287)||(27657249-27657297)
chr6 (235-287)||(28789951-28790003)
chr6 (176-272)||(27600624-27600721)
chr6 (131-217)||(28782833-28782921)
[»] chr4 (9 HSPs)
chr4 (225-287)||(18728071-18728133)
chr4 (225-287)||(18652047-18652109)
chr4 (225-287)||(18686145-18686207)
chr4 (225-281)||(18076774-18076830)
chr4 (225-287)||(18676105-18676167)
chr4 (225-279)||(18693675-18693729)
chr4 (225-287)||(18720635-18720697)
chr4 (114-198)||(18686010-18686094)
chr4 (114-198)||(18693537-18693621)
[»] scaffold0419 (2 HSPs)
scaffold0419 (235-286)||(11096-11147)
scaffold0419 (131-217)||(11180-11268)
[»] scaffold0277 (4 HSPs)
scaffold0277 (238-287)||(1068-1117)
scaffold0277 (131-217)||(10077-10165)
scaffold0277 (160-217)||(975-1032)
scaffold0277 (235-287)||(10196-10248)
[»] scaffold0003 (1 HSPs)
scaffold0003 (225-281)||(62582-62638)
[»] chr1 (1 HSPs)
chr1 (225-260)||(26139705-26139740)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 26659892 - 26659619
Alignment:
Q  18 aaaataatatatttgaaagtaataatatgcgtccgtgtcgggttggtgttagacacaaacacatgtcagacacgccatcaaccagaagtttatgtgctac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26659892 aaaataatatatttgaaagtaataatatgcgtccgtgtcgggttggtgttagacacaaacacatgtcagacacgccatcaaccagaagtttatgtgctac 26659793  T
Q  118 aaagcatcgtccccagaatattacatcgtgtcttgtcgtttaaaaaacttttacagctagaaacaattaatttgtttataataacgatattgatgtacct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26659792 aaagcatcgtccccagaatattacatcgtgtcttgtcgtttaaaaaacttttacagctagaaacaattaatttgtttataataacgatattgatgtacct 26659693  T
Q  218 agtcacagtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatggtgt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26659692 agtcacagtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatggtgt 26659619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 26765863 - 26765590
Alignment:
Q  18 aaaataatatatttgaaagtaataatatgcgtccgtgtcgggttggtgttagacacaaacacatgtcagacacgccatcaaccagaagtttatgtgctac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26765863 aaaataatatatttgaaagtaataatatgcgtccgtgtcgggttggtgttagacacaaacacatgtcagacacgccatcaaccagaagtttatgtgctac 26765764  T
Q  118 aaagcatcgtccccagaatattacatcgtgtcttgtcgtttaaaaaacttttacagctagaaacaattaatttgtttataataacgatattgatgtacct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26765763 aaagcatcgtccccagaatattacatcgtgtcttgtcgtttaaaaaacttttacagctagaaacaattaatttgtttataataacgatattgatgtacct 26765664  T
Q  218 agtcacagtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatggtgt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26765663 agtcacagtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatggtgt 26765590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 26659622 - 26659561
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagat 286  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  26659622 gtgttccttttcttttgtttcagtaagcaccaagttctgcatgtctgacactaaagctagat 26659561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 26765593 - 26765532
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagat 286  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  26765593 gtgttccttttcttttgtttcagtaagcaccaagttctgcatgtctgacactaaagctagat 26765532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 28782797 - 28782748
Alignment:
Q  238 tttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  28782797 tttgtttcagtaagcaccaagttttgcatgcctgacactaaagctagatg 28782748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 27424725 - 27424781
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagc 281  Q
    |||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||    
T  27424725 gtgttccttttcttttgtttcagtaagcacgaagtttggcatgcctgacactaaagc 27424781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 28790122 - 28790034
Alignment:
Q  131 cagaatattacatcgtgtcttg--tcgtttaaaaaacttttacagctagaaacaattaatttgtttataataacgatattgatgtacct 217  Q
    |||||| ||||||||||||||   || ||| |||||||| | ||| ||||||||||||||| ||||||||||| |||| ||||||||||    
T  28790122 cagaatcttacatcgtgtctttgatcatttgaaaaacttatgcaggtagaaacaattaattagtttataataatgataatgatgtacct 28790034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 27600863 - 27600918
Alignment:
Q  231 cttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagat 286  Q
    |||||||||||||||| |||||||||||||  ||||||| ||||||| ||||||||    
T  27600863 cttttcttttgtttcagtaagcaccaagttccgcatgccggacactacagctagat 27600918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 27607662 - 27607724
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    |||||||  ||||||||||||| |||| ||||||||  ||||| |||||||||||||||||||    
T  27607662 gtgttccaattcttttgtttcattaagaaccaagttccgcatggctgacactaaagctagatg 27607724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 27657249 - 27657297
Alignment:
Q  239 ttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||||    
T  27657249 ttgtttcattaagaaccaagttctgcatgactgacactaaagctagatg 27657297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 28790003 - 28789951
Alignment:
Q  235 tcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    |||||||||||| |||| |||||||| |||||||||||| |||||| ||||||    
T  28790003 tcttttgtttcagtaagaaccaagttttgcatgcctgactctaaagatagatg 28789951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 27600624 - 27600721
Alignment:
Q  176 agaaacaattaatttgtttataataacgatattgatgtacctagtca--cagtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctga 272  Q
    ||||||||| |||| ||||||||||| |||| |||||||||||||||    || ||||||||||||| | ||  ||||||||| ||| |||||||||||    
T  27600624 agaaacaat-aattggtttataataatgataatgatgtacctagtcatgttgttttccttttcttttttgtctgtaagcaccatgttctgcatgcctga 27600721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 28782921 - 28782833
Alignment:
Q  131 cagaatattacatcgtgtcttg--tcgtttaaaaaacttttacagctagaaacaattaatttgtttataataacgatattgatgtacct 217  Q
    |||||| ||||||||||||||   || ||| |||||||| | ||  ||||||||||||||| | ||||||||| |||| ||||||||||    
T  28782921 cagaatcttacatcgtgtctttgatcatttgaaaaacttatgcaagtagaaacaattaattagcttataataatgataatgatgtacct 28782833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 18728071 - 18728133
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    |||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  18728071 gtgttccttttcttttgtttcagtaagcaccaagttccgcatgcctgacactaaagctagatg 18728133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 18652047 - 18652109
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    ||||||||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||    
T  18652047 gtgttccttttctattgtttcagtaagcaccaagttccgcatgcctgacactaaagctagatg 18652109  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 18686145 - 18686207
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    ||||||||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||    
T  18686145 gtgttccttttctattgtttcattaagcaccaagttccgcatgcctgacactaaagctagatg 18686207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 18076830 - 18076774
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagc 281  Q
    |||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||    
T  18076830 gtgttccttttcttttgtttcagtaagcacgaagtttggcatgcctgacactaaagc 18076774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 18676105 - 18676167
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    ||||||||||||| |||||||| |||||||||||||  |||||||||||| |||| |||||||    
T  18676105 gtgttccttttctattgtttcagtaagcaccaagttccgcatgcctgacaataaaactagatg 18676167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 18693675 - 18693729
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaa 279  Q
    ||||||||||||| |||||||| |||||||||||||  |||||||||||||||||    
T  18693675 gtgttccttttctattgtttcagtaagcaccaagttccgcatgcctgacactaaa 18693729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 18720635 - 18720697
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    ||||||||||||| |||||||| |||||||||||||  ||||||||| || |||| |||||||    
T  18720635 gtgttccttttctattgtttcagtaagcaccaagttccgcatgcctggcaataaaactagatg 18720697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 18686010 - 18686094
Alignment:
Q  114 ctacaaagcatcgtccccagaatattacatcgtgtcttgtcgtttaaaaaacttttacagctagaaacaattaatttgtttataa 198  Q
    |||||||||||  ||  |||||| ||| ||| ||||| ||| ||| ||||||| || ||| ||||||||||||||| ||||||||    
T  18686010 ctacaaagcattttcgacagaatcttatatcatgtctcgtcatttgaaaaactcttccagatagaaacaattaattggtttataa 18686094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 18693537 - 18693621
Alignment:
Q  114 ctacaaagcatcgtccccagaatattacatcgtgtcttgtcgtttaaaaaacttttacagctagaaacaattaatttgtttataa 198  Q
    |||||||||||  ||  |||||| ||| ||| ||||| ||| ||| ||||||| || ||| ||||||||||||||| ||||||||    
T  18693537 ctacaaagcattttcgacagaatcttatatcatgtctcgtcatttgaaaaactcttccaggtagaaacaattaattggtttataa 18693621  T

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Target: scaffold0419 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 11147 - 11096
Alignment:
Q  235 tcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagat 286  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  11147 tcttttgtttcagtaagcaccaagttttgcatgcctgacactaaagctagat 11096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 11268 - 11180
Alignment:
Q  131 cagaatattacatcgtgtcttg--tcgtttaaaaaacttttacagctagaaacaattaatttgtttataataacgatattgatgtacct 217  Q
    |||||| ||||||||||||||   || ||| |||||||| | ||| ||||||||||||| | ||||||||||| |||| ||||||||||    
T  11268 cagaatcttacatcgtgtctttgatcatttgaaaaacttatgcaggtagaaacaattaagtagtttataataatgataatgatgtacct 11180  T

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Target: scaffold0277 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 1068 - 1117
Alignment:
Q  238 tttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  1068 tttgtttcagtaagcaccaagttttgcatgcctgacactaaagctagatg 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 10077 - 10165
Alignment:
Q  131 cagaatattacatcgtgtcttg--tcgtttaaaaaacttttacagctagaaacaattaatttgtttataataacgatattgatgtacct 217  Q
    |||||| ||||||||||||||   || ||| |||||||| | ||| ||||||||||||||| ||||||||||| |||| ||||||||||    
T  10077 cagaatcttacatcgtgtctttgatcatttgaaaaacttatgcaggtagaaacaattaattagtttataataatgataatgatgtacct 10165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 975 - 1032
Alignment:
Q  160 aaaaacttttacagctagaaacaattaatttgtttataataacgatattgatgtacct 217  Q
    |||||||| | ||| ||||||||||||||| ||||||||||| |||| ||||||||||    
T  975 aaaaacttatgcaggtagaaacaattaattagtttataataatgataatgatgtacct 1032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 10196 - 10248
Alignment:
Q  235 tcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 287  Q
    |||||||||||| |||| |||||||| |||||||||||| |||||| ||||||    
T  10196 tcttttgtttcagtaagaaccaagttttgcatgcctgactctaaagatagatg 10248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 62638 - 62582
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagc 281  Q
    |||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||    
T  62638 gtgttccttttcttttgtttcagtaagcacgaagtttggcatgcctgacactaaagc 62582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 26139740 - 26139705
Alignment:
Q  225 gtgttccttttcttttgtttcaataagcaccaagtt 260  Q
    |||||||||||||||||||||| |||||||||||||    
T  26139740 gtgttccttttcttttgtttcattaagcaccaagtt 26139705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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