View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17968_low_2 (Length: 309)
Name: NF17968_low_2
Description: NF17968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17968_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 41761096 - 41760807
Alignment:
| Q |
1 |
gttacctcaaatgaggtgagttatgattatcaatggcactctaattactaataatttttccttttcctannnnnnnnaaacaaaatttggttcataaaat |
100 |
Q |
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| T |
41761096 |
gttacctcaaatgaggtgagttatgattatcaatggcactctaattactaataatttttccttttcctattttttttaaacaaaatttggttcataaaat |
41760997 |
T |
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| Q |
101 |
atgcttagagtaaggctataacttaattaaaaagaaatttggcatggaaacttgctctttgttaatatctgaaatctttgcaaaatttaatggatgcata |
200 |
Q |
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| T |
41760996 |
atgcttagagtaaggctataacttaattaaaaagaaatttggcatggaaacttgctctttgttaatatctgaaatctttgcaaaatttaatggatgcata |
41760897 |
T |
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| Q |
201 |
catctaatttctaaaatacaagaaagaagcatgatcaaaagaaagaagatcat-ggttttgttgcttaaatcaaaccatgattaaatgccgtct |
293 |
Q |
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| T |
41760896 |
catctaatttctaaaataca----agaagcatgatcaaaagaaagaagatcatgggttttgttgcttaaatcaaaccatgattaaatgccgtct |
41760807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 41795746 - 41795667
Alignment:
| Q |
129 |
aaaaagaaatttggcatggaaacttgctctttgttaatatctg-aaatctttgcaaaatttaatggatgcatacatctaa |
207 |
Q |
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| T |
41795746 |
aaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaa |
41795667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 41795663 - 41795596
Alignment:
| Q |
228 |
agcatgatcaaaagaaagaagatcatggtt--ttgttgcttaaatcaaaccatgattaaatgccgtct |
293 |
Q |
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| T |
41795663 |
agcatgatcaaaagaaagaagatcatggttgctgtttacttaaatcaaaccatgactaaatgccgtct |
41795596 |
T |
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