View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17969_high_7 (Length: 249)

Name: NF17969_high_7
Description: NF17969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17969_high_7
NF17969_high_7
[»] chr7 (2 HSPs)
chr7 (13-249)||(36283011-36283248)
chr7 (43-249)||(41893093-41893301)
[»] chr6 (3 HSPs)
chr6 (13-249)||(29260755-29260993)
chr6 (13-249)||(7439031-7439267)
chr6 (15-245)||(15286574-15286806)
[»] chr1 (5 HSPs)
chr1 (13-246)||(49837765-49838000)
chr1 (13-249)||(34966527-34966765)
chr1 (13-249)||(5536792-5537029)
chr1 (13-249)||(37467207-37467445)
chr1 (13-245)||(46593041-46593275)
[»] chr3 (1 HSPs)
chr3 (21-249)||(15790910-15791140)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 36283248 - 36283011
Alignment:
Q  13 agaaacctcatatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattc 112  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36283248 agaaaccccatatcaattttgaatttaatttgtctttcaagaaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtaattc 36283149  T
Q  113 aagcaaagcagatttatgagattcaattttatccctttttgttttccccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtagt 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36283148 aagcaaagcatatttatgagattcaattttatccctttttgttttccccctttcagaaccctaattttatgttggtagtgctcgattttgatgttgtagt 36283049  T
Q  213 taat-atttgttgtgattctttgttgtagggttttgtt 249  Q
    ||||   ||||||||||| |||||||||||||||||||    
T  36283048 taatggattgttgtgattgtttgttgtagggttttgtt 36283011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 43 - 249
Target Start/End: Original strand, 41893093 - 41893301
Alignment:
Q  43 tgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattcaagcaaagcagatttatgagattcaatttt 142  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  41893093 tgtctttcaacaaggaatcataatcaaaaaaaggttagcaattgagtatagaattcgttttatgtcattcaagcaaagcagatttatcagattcaatttt 41893192  T
Q  143 atccctttttg-ttttccccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtagttaat-atttgttgtgattctttgttgtag 240  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||   ||||||||||| |||||||||     
T  41893193 atccctttttgctttcccccctttcagaaccctaattttatgttggtagtgctcgattttgttgttgtggttaatgggttgttgtgattgtttgttgtat 41893292  T
Q  241 ggttttgtt 249  Q
    |||||||||    
T  41893293 ggttttgtt 41893301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 29260993 - 29260755
Alignment:
Q  13 agaaacctcatatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattc 112  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||    
T  29260993 agaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatagaattcgttttctttcattc 29260894  T
Q  113 aagcaaagcagatttatgagattcaattttatccctttttgttttc-cccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtag 211  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||| |    
T  29260893 aagcaaagcagatttatcatattcaattttatccctttttgttttccccccttttagaaccctaattttatgttggtagtgctcgattttgttgttgtgg 29260794  T
Q  212 ttaat-atttgttgtgattctttgttgtagggttttgtt 249  Q
    |||||   ||||||||||| |||||||||||||||||||    
T  29260793 ttaatgggttgttgtgattttttgttgtagggttttgtt 29260755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 7439267 - 7439031
Alignment:
Q  13 agaaacctcatatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattc 112  Q
    ||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  7439267 agaaaccccatatcgattttgaatttaatttgtgtttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatagaattcgttttatgtcattc 7439168  T
Q  113 aagcaaagcagatttatgagattcaattttatccctttttgttttccccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtagt 212  Q
    |||||||| |||||||| | |||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||| |||||| ||    
T  7439167 aagcaaagtagatttatca-attcaattttatcccttttttttttccccctttcaaaaccctaattttatattggtagtgctcgattttgttgttgtggt 7439069  T
Q  213 taat-atttgttgtgattctttgttgtagggttttgtt 249  Q
    ||||   || ||||||||||||||||||||||||||||    
T  7439068 taatgggttattgtgattctttgttgtagggttttgtt 7439031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 15286806 - 15286574
Alignment:
Q  15 aaacctcatatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattcaa 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||    
T  15286806 aaacctcatatcaattttgaatttaatttgtctttcaacaaggaatcataatcaaaaagaggttagcaattgagtatagaattcgttttatgtcattcaa 15286707  T
Q  115 gcaaagcagatttatgagattcaattttatccctttttgttttc-cccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtagtt 213  Q
    |||||||| |||||| | |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||| |||||  |||    
T  15286706 gcaaagcaaatttatcatattcaattttatccctttttgttttccccccttttagaaccctaattttatgttagtagtgctcgattttgttgttgcggtt 15286607  T
Q  214 aat-atttgttgtgattctttgttgtagggttt 245  Q
    |||   ||||||||||| |||||||||||||||    
T  15286606 aatgggttgttgtgattgtttgttgtagggttt 15286574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 49837765 - 49838000
Alignment:
Q  13 agaaacctcatatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattc 112  Q
    ||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  |||| ||||||||||||||    
T  49837765 agaaaccccatatcaattttgaatttaatttgtctttcaacaaagaatcataatcgaaaaaaggttagcaattgagtattgaattcgttttatgtcattc 49837864  T
Q  113 aagcaaagcagatttatgagattcaattttatccctttttgttt-tccccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtag 211  Q
    ||||||||||||||||| |||||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||| |||||| |    
T  49837865 aagcaaagcagatttatcagattcaattttatccctttttatttccccccctttcagaaccctaattttatgttggtagtgctcgattttgttgttgtgg 49837964  T
Q  212 ttaat-atttgttgtgattctttgttgtagggtttt 246  Q
    |||||   ||||||||||| ||||||||||||||||    
T  49837965 ttaatgggttgttgtgattgtttgttgtagggtttt 49838000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 34966765 - 34966527
Alignment:
Q  13 agaaacctcatatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattc 112  Q
    |||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  34966765 agaaaccctatatcaattttgaatttaatttgtcttttaacaaggaatcataatcgaaaaaaggtttgcaattgagtatagaattcgttttatgtcattc 34966666  T
Q  113 aagcaaagcagatttatgagattcaattttatccctttttgttttc-cccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtag 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||| |    
T  34966665 aagcaaagcagatttatcagattcaattttatccctttttgttttccccccttttagaaccctaattttatgttggtagtgctcgattttgttgttgtgg 34966566  T
Q  212 ttaat-atttgttgtgattctttgttgtagggttttgtt 249  Q
    |||||   ||||||||||| |||||||| ||||||||||    
T  34966565 ttaatgggttgttgtgattgtttgttgtcgggttttgtt 34966527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 5536792 - 5537029
Alignment:
Q  13 agaaacctcatatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattc 112  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  5536792 agaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatagaattcattttatgtcattc 5536891  T
Q  113 aagcaaagcagatttatgagattcaattttatcccttttt-gttttccccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtag 211  Q
    |||||||||| |||||| |||||||| |||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |    
T  5536892 aagcaaagcatatttatcagattcaa-tttatccctttttatttttccccctttcagaaccctaattttatgttggtagtgctcgatgttgttgttgtgg 5536990  T
Q  212 ttaat-atttgttgtgattctttgttgtagggttttgtt 249  Q
    |||||   ||||||||||| |||||||||||||||||||    
T  5536991 ttaatgggttgttgtgattgtttgttgtagggttttgtt 5537029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 37467207 - 37467445
Alignment:
Q  13 agaaacctcatatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattc 112  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||    
T  37467207 agaaaccccatatcaattttgaatttaatttttctttcaacaaggaatcataatcgaaaaaaggttagtaattgagtatataattcgtttcatgtcattc 37467306  T
Q  113 aagcaaagcagatttatgagattcaattttatccctttttgtttt-ccccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtag 211  Q
    ||||||  ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |||||| |    
T  37467307 aagcaagacagatttatcagattcaattttatccctttttgttttcccccctttcagaaccctaattttatgtttgtagtgctcgattttgttgttgtgg 37467406  T
Q  212 ttaat-atttgttgtgattctttgttgtagggttttgtt 249  Q
    |||||   |||||| |||| |||||||||||||||||||    
T  37467407 ttaatggattgttgcgattgtttgttgtagggttttgtt 37467445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 46593275 - 46593041
Alignment:
Q  13 agaaacctcatatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattc 112  Q
    |||||||  ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||| |||| |||| ||||||||||||||    
T  46593275 agaaaccctatatcaattttgaatttaatttgcctttcaacaaggaatcataatcgaaaaaaggttttcaattgaatatagaattcgttttatgtcattc 46593176  T
Q  113 aagcaaagcagatttatgagattcaattttatccctttttgttttc-cccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtag 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||| || ||| |    
T  46593175 aagcaaagcagatttatcagattcaattttatccctttttgttttccccccttttagaaccctaattttatgttggtagtgctagattttgttgctgtgg 46593076  T
Q  212 ttaat-atttgttgtgattctttgttgtagggttt 245  Q
    |||||   ||||||||||| ||| |||| ||||||    
T  46593075 ttaatgggttgttgtgattttttattgttgggttt 46593041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 15791140 - 15790910
Alignment:
Q  21 catatcaattttgaatttaatttgtctttcaataaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtcattcaagcaaag 120  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15791140 catatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatataatttgttttatgtcattcaagcaaag 15791041  T
Q  121 cagatttatgagattcaattttatccctttttgttttc-cccctttcagaaccctaatgttatgttggtagtgctcgattttgatgttgtagttaat-at 218  Q
    || |||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| || ||| |||| |       
T  15791040 caaatttatcagattcaattctatccctttttgttttccccccttttagaaccctaattttatgttggtagtgctcgattttgttggtgtggttactcgg 15790941  T
Q  219 ttgttgtgattctttgttgtagggttttgtt 249  Q
    ||||||||||| ||||||||| |||||||||    
T  15790940 ttgttgtgattgtttgttgtaaggttttgtt 15790910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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