View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17969_low_1 (Length: 503)
Name: NF17969_low_1
Description: NF17969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17969_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 446
Target Start/End: Complemental strand, 11861778 - 11861356
Alignment:
| Q |
15 |
taacaaagggcaatccataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
11861778 |
taacaaagggcaatccataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaatctaactttctgcattcagaaagaaccagt |
11861679 |
T |
|
| Q |
115 |
ttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtc |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||| || |
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|
| T |
11861678 |
ttttcaagtgaagtgaggttacctatactttctggtaaaaaagttaaaccatgacaatcataaatccttaagtctttcaaagtgttcacattttcaactc |
11861579 |
T |
|
| Q |
215 |
cccatggaagggtcttcagttttggaatactccttaacgtaagagaacgaagatttttcagaccctcccattcagttccagcgaatttgtcaatgtcaaa |
314 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| || | || | |||||| |
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|
| T |
11861578 |
cccatggaagggacttaagttttggaatactccttaatgtaagagaacgaaggtttttcagaccctcccactcattt-----ggatgt----ttgtcaag |
11861488 |
T |
|
| Q |
315 |
aacaagttgttcacatttttcaatagaaagtgatgtgagtgaactcaaagacttaaaaccttgtggcagagacgttaaattaaaacaatctctaatgtga |
414 |
Q |
| |
|
| |||||| || |||| ||||||||| |||| | |||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
11861487 |
atcaagttcttgacatctttcaatagtgagtgtttggagtgaactcaaagacttgaaaccttgtggtagagacgctaaattaaaacaatctctaatgtga |
11861388 |
T |
|
| Q |
415 |
agttccttaagtgaaatgaggttttcgagcca |
446 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||| |
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|
| T |
11861387 |
agttcctcaagtgaaatgaagtttttgagcca |
11861356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 15 - 454
Target Start/End: Complemental strand, 11829679 - 11829222
Alignment:
| Q |
15 |
taacaaagggcaatccataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||| |
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|
| T |
11829679 |
taacaaagggcaatccataataatcaaagtatttagagactgaagcatttccattcctttgggaagagaatctaaatttctgcattcagaaagaaccagt |
11829580 |
T |
|
| Q |
115 |
ttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtc |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| || |
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|
| T |
11829579 |
ctttcaagtgaagtgaggttacctatactttctggtaaagaagttaaaccatgacaatcataaatcctcaagtctttcaaagttttcacgttttcaactc |
11829480 |
T |
|
| Q |
215 |
cccatggaagggtcttcagttttggaatactccttaacgtaagagaacgaagatttttcagaccctcccatt------------------cagttccagc |
296 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||||| || |
|
|
| T |
11829479 |
cccatggaagggacttcagttttggaatactccttaatgtaagagattgaaggtttttcagaccctcccattcagtcagaccatcccattcagttccggc |
11829380 |
T |
|
| Q |
297 |
gaatttgtcaatgtcaaaaacaagttgttcacatttttcaatagaaagtgatgtgagtgaactcaaagacttaaaaccttgtggcagagacgttaaatta |
396 |
Q |
| |
|
| ||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| || ||| |||| ||||||||||| |||||| ||| || |
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|
| T |
11829379 |
ggatttgtcaatgtccagaacaagttgttcacatctttcaatagaaagtgatatgagtgagcttaaaaacttgaaaccttgtggtagagactccaaaata |
11829280 |
T |
|
| Q |
397 |
aaacaatctctaatgtgaagttccttaagtgaaatgaggttttcgagccaactctctg |
454 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
11829279 |
aaacaatctctaatgtgaagttcctcaagtgaaatgaagtttttaagccaactctctg |
11829222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 15 - 430
Target Start/End: Original strand, 11900740 - 11901146
Alignment:
| Q |
15 |
taacaaagggcaatccataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||| || |||| |||||||||||||||| ||| ||| |
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|
| T |
11900740 |
taacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgcattcagaaataactagt |
11900839 |
T |
|
| Q |
115 |
ttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtc |
214 |
Q |
| |
|
|| |||| ||||| ||||||||||| ||||||| || ||||| ||||||||||||||||| |||||| || | ||||| |||| ||||||| | |
|
|
| T |
11900840 |
ttgccaagggaagtgaggttacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaagagttcaagttttcaattt |
11900939 |
T |
|
| Q |
215 |
cccatggaagggtcttcagttttggaatactccttaacgtaagagaacgaagatttttcagaccctcccattcagttccagcgaatttgtcaatgtcaaa |
314 |
Q |
| |
|
||| |||||||| ||| ||||| |||||||||||||| |||||||||||||| ||| ||||||||| |||||||||||| | | ||||| | |
|
|
| T |
11900940 |
cccttggaagggacttgagtttgggaatactccttaatgtaagagaacgaagctttctcagacccttccattcagttccggag---------atgtcgag |
11901030 |
T |
|
| Q |
315 |
aacaagttgttcacatttttcaatagaaagtgatgtgagtgaactcaaagacttaaaaccttgtggcagagacgttaaattaaaacaatctctaatgtga |
414 |
Q |
| |
|
| |||||| ||||||| | ||||||| |||||| ||||||||||||||||||| ||||||||||| | |||| ||||| ||| |||||||||||||||| |
|
|
| T |
11901031 |
atcaagttcttcacatctctcaatagtgagtgatatgagtgaactcaaagacttgaaaccttgtggtaaagactttaaaataacacaatctctaatgtga |
11901130 |
T |
|
| Q |
415 |
agttccttaagtgaaa |
430 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
11901131 |
agttcctcaagcgaaa |
11901146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 12040573 - 12040158
Alignment:
| Q |
15 |
taacaaagggcaatccataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagt |
114 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
12040573 |
taacaacgggcagtccctaataatcaaagtctttagagactgtagcgtttccattcctttgggcagagaatctaactttctgcattccgaaagaaccagt |
12040474 |
T |
|
| Q |
115 |
ttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtc |
214 |
Q |
| |
|
||||||||||||| | ||| | ||| ||||| || | |||||||||||| ||||||||||||| ||||||| ||| |||| ||||| | || || |
|
|
| T |
12040473 |
ttttcaagtgaagcgaagttgcatatgctttccgggagagaagttaaaccctggcaatcataaagccttaagacttgtaaagagttcacaatctcgaatc |
12040374 |
T |
|
| Q |
215 |
cccatggaagggtcttcagttttggaatactccttaacgtaagagaacgaagatttttcagaccctcccattcagttccagcgaatttgtcaatgtcaaa |
314 |
Q |
| |
|
|| ||||||| ||| || ||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||| || | | | |||| |
|
|
| T |
12040373 |
cctgaggaagggacttgagatttggaatactccttaatgtaagagaacgaaggtttatcagaccctcccactcatttggggagga---------ctcaag |
12040283 |
T |
|
| Q |
315 |
aacaagttgttcacatttttcaatagaaagtgatgtgagtgaactcaaagacttaaaaccttgtggcagagacgttaaattaaaacaatctctaatgtga |
414 |
Q |
| |
|
| ||||||||| |||| ||||||||| |||| | |||||||||||||||| ||||||| || |||||| | |||| |||||||||| ||||||| |
|
|
| T |
12040282 |
atcaagttgttgacatctttcaatagtgagtgtttcgagtgaactcaaagaccggaaaccttcaggtagagacttcaaatggaaacaatctcgaatgtga |
12040183 |
T |
|
| Q |
415 |
agttccttaagtgaaatgaggtttt |
439 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
12040182 |
agttccttaagtgaaatgaagtttt |
12040158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 11733468 - 11733223
Alignment:
| Q |
15 |
taacaaagggcaatccataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagt |
114 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||| ||| ||| |||||| ||||||||||||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
11733468 |
taacaaggggcagtccataatgatcaaggtaaatagtgacgtgagctttatcattcctttgggcagagaatccatacttctgcattcagaaagaaccagt |
11733369 |
T |
|
| Q |
115 |
ttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtc |
214 |
Q |
| |
|
| ||||||||| || || |||| ||||||||||| |||||||| | ||||||||||||||||||| |||| ||| | ||||| |||| || || |
|
|
| T |
11733368 |
tcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaactagggcaatcataaatccttaaatctttcaatgatttcaagtttccaaatc |
11733269 |
T |
|
| Q |
215 |
cccatggaagggtcttcagttttggaatactccttaacgtaagaga |
260 |
Q |
| |
|
| | || ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
11733268 |
cgcgtgtaagggtcactagttttggaatactccttaaagtaagaga |
11733223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 11829096 - 11829059
Alignment:
| Q |
460 |
acgttcgactccaccagaacgagctcatcatcaagacc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11829096 |
acgttcgactccaccagaacgagctcatcatcaagacc |
11829059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 495
Target Start/End: Complemental strand, 12040017 - 12039982
Alignment:
| Q |
460 |
acgttcgactccaccagaacgagctcatcatcaaga |
495 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12040017 |
acgtttgactccaccagaacgagctcatcatcaaga |
12039982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 460 - 498
Target Start/End: Original strand, 11901284 - 11901322
Alignment:
| Q |
460 |
acgttcgactccaccagaacgagctcatcatcaagacca |
498 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
11901284 |
acgttcgactccacaagaacaagctcatcatcaagacca |
11901322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 497
Target Start/End: Complemental strand, 11861224 - 11861191
Alignment:
| Q |
464 |
tcgactccaccagaacgagctcatcatcaagacc |
497 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
11861224 |
tcgactccaccacaacgagctcatcatcaagacc |
11861191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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