View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17969_low_2 (Length: 467)
Name: NF17969_low_2
Description: NF17969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17969_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 21 - 419
Target Start/End: Original strand, 36601091 - 36601489
Alignment:
| Q |
21 |
tatcaatcctaatggagaaagaggtccatttacaataaccaacttagattttaatgaactcgttccaaaagnnnnnnncaccatgcttgttgcaaagaca |
120 |
Q |
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| T |
36601091 |
tatcaatcctaatggagaaagaggtccatttacaataaccaacttagattttaatgaactcgttccaaaagaaaaaaacaccatgcttgttgcaaagaca |
36601190 |
T |
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| Q |
121 |
aagaacataaagcacaacaacaactacaagttgaagaagttagaggacattccagaggaaacagaacttgaagatgagactcatccacaacttgaagaag |
220 |
Q |
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| T |
36601191 |
aagaacataaagcacaccaacaactacaagttgaagaagttagaggacattccagaggaaacagaacttgaagatgagactcatccacaacttgaagaag |
36601290 |
T |
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| Q |
221 |
cttgtgttcacttggaaatggatttgcaagtactaaggaagtctcttgatatgggactttgtgtactttgccttggtgttggttacatggtttctactaa |
320 |
Q |
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| T |
36601291 |
cttgtgttcacttggaaatggatttgcaagtactaaggaagtctcttgatatgggactttgtgtactttgccttggtgttggttacatggtttctactaa |
36601390 |
T |
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| Q |
321 |
atttcgtccacgacctaagttttcttcgcttttatcatcatcctcttttttgttcttctaacatatgttgtttcatagtactagtactattcaatttcc |
419 |
Q |
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| T |
36601391 |
atttcgtccacgacctaagttttcttcgcttttatcatcatcctcttttttgttcttctaacatatgttgtttcatagtactagtactattcaatttcc |
36601489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 388
Target Start/End: Original strand, 33887661 - 33887817
Alignment:
| Q |
232 |
ttggaaatggatttgcaagtactaaggaagtctcttgatatgggactttgtgtactttgccttggtgttggttacatggtttctactaaatttcgtccac |
331 |
Q |
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| T |
33887661 |
ttggaaattgatttgcaagtgctgaggaagtccttcgatatgggactttgtgtactatgctttagcttagggtacatggtttctactaaatttcacccac |
33887760 |
T |
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| Q |
332 |
gacctaagttttcttcgcttttatcatcatcctcttttttgttcttctaacatatgt |
388 |
Q |
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| T |
33887761 |
ggaccaagttttcttcacttttatcatcatcttctttcttgttcttgtaatatatgt |
33887817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 347
Target Start/End: Original strand, 33892677 - 33892792
Alignment:
| Q |
232 |
ttggaaatggatttgcaagtactaaggaagtctcttgatatgggactttgtgtactttgccttggtgttggttacatggtttctactaaatttcgtccac |
331 |
Q |
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| T |
33892677 |
ttggaaattgatttacaagtattgaggaagtacttcgatatgggactttgtgtactctgctttagcttgggttacatggtttctactaaatttcatccac |
33892776 |
T |
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| Q |
332 |
gacctaagttttcttc |
347 |
Q |
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| T |
33892777 |
ggcccaagttttcttc |
33892792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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