View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17969_low_4 (Length: 425)
Name: NF17969_low_4
Description: NF17969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17969_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 1836678 - 1836287
Alignment:
| Q |
18 |
attatgggcttcaaaatttcataaccttattgtgtcccaaataattgagacaatagaacaaatagagacaaggaaacaaataattcaattccttctggtg |
117 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836678 |
attatgggcttcaaaatttcttaactttattgtgtcccaaataattgagacaatagaacaaatagagacaaggaaacaaataattcaattccttctggtg |
1836579 |
T |
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| Q |
118 |
tcacaatcatacaatcattagaatccaatctttaaaactatgaagtcgacaccacaagtcaaaccgaattatcaattttccaatctcagaagaaaaatat |
217 |
Q |
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| T |
1836578 |
tcacaaccat--------tagaatccaatctttataactatgaagtcgacaccacaagtcaaaccgaattattaatttcccaatctcaaaagaaaaatat |
1836487 |
T |
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| Q |
218 |
tgcatttggatttgattgtatttgaaacatgacagtccactaattatttataactaaggtgtcctctaaatgctttataagcttccaatgtgggacttaa |
317 |
Q |
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| T |
1836486 |
tgcatttgcatttgattgtatttgaaatatgacagtccactacttatttataactaaggtgtcctctaaatgctttataagcttccgatgtgggacttaa |
1836387 |
T |
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| Q |
318 |
tacggtttctattcaactttttatatttttgacagaaacttggtaaattggactttcaaaacacattcagttcaaaacatattatacaagaacctttgat |
417 |
Q |
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| T |
1836386 |
tacggtttctattcaactttttatatttttgacagaaacttggtaaattggactttcaaaacacattcagttcaaaacatattatacaggaacctttgat |
1836287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 372
Target Start/End: Complemental strand, 1833068 - 1832955
Alignment:
| Q |
261 |
ttatttataactaaggtgtcctctaaatgctttataagcttccaatgtgggacttaatacggtttct--attcaactttttatatttttgacagaaactt |
358 |
Q |
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| T |
1833068 |
ttatttatagctatggtgtcctctcgatgctttatatgttgtcgatgtgggacttaatattgtctctctattcaactttgtatatttttgacagaaactt |
1832969 |
T |
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| Q |
359 |
ggtaaattggactt |
372 |
Q |
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||||||| ||||| |
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| T |
1832968 |
agtaaattcgactt |
1832955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 1846431 - 1846377
Alignment:
| Q |
262 |
tatttataactaaggtgtcctctaaatgctttataagcttccaatgtgggactta |
316 |
Q |
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| T |
1846431 |
tatttataacaaaggtttcctctcaatgctttataagctgccagtgtgggactta |
1846377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 1848289 - 1848199
Alignment:
| Q |
227 |
atttgattgtatttgaaacatga-cagtccactaattatttataactaaggtgtcctctaaatgctttataagcttccaatgtgggactta |
316 |
Q |
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|||| ||||||||||||| ||| |||||||| | ||||||||| |||||| |||||| ||||||||||||| ||||||||||||||| |
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| T |
1848289 |
atttaattgtatttgaaagatgtgcagtccaccacctatttataagtaaggtttcctctcaatgctttataagacgccaatgtgggactta |
1848199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 1824547 - 1824501
Alignment:
| Q |
357 |
ttggtaaattggactttcaaaacacattcagttcaaaacatattata |
403 |
Q |
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||||| |||||||||| | |||||| ||||||||||||||||||||| |
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| T |
1824547 |
ttggtcaattggacttgccaaacacgttcagttcaaaacatattata |
1824501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 1842903 - 1842849
Alignment:
| Q |
262 |
tatttataactaaggtgtcctctaaatgctttataagcttccaatgtgggactta |
316 |
Q |
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|||||||| ||||||| ||||| ||||||||||||||| || |||||||||||| |
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| T |
1842903 |
tatttatagctaaggtttcctcccaatgctttataagctgccgatgtgggactta |
1842849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 325 - 407
Target Start/End: Complemental strand, 17849082 - 17849000
Alignment:
| Q |
325 |
tctattcaactttttatatttttgacagaaacttggtaaattggactttcaaaacacattcagttcaaaacatattatacaag |
407 |
Q |
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| T |
17849082 |
tctattcaacttcgtatatttttgacagaaacttggtcaattggacttgcaaaacacattcagttcaaaacatattatacaag |
17849000 |
T |
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