View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17969_low_5 (Length: 416)

Name: NF17969_low_5
Description: NF17969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17969_low_5
NF17969_low_5
[»] chr4 (2 HSPs)
chr4 (237-409)||(38028612-38028784)
chr4 (21-184)||(38028754-38028917)
[»] chr6 (2 HSPs)
chr6 (40-91)||(31574566-31574617)
chr6 (108-152)||(31574520-31574564)
[»] chr8 (1 HSPs)
chr8 (190-236)||(15150837-15150883)
[»] chr3 (1 HSPs)
chr3 (108-152)||(6509332-6509376)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 237 - 409
Target Start/End: Complemental strand, 38028784 - 38028612
Alignment:
Q  237 tgctttcttacttgttttgtgtttccattaaaaactctttgatctgatccatttttagagtggagtgttaataagtctatgaacgacaacaagattgtgc 336  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028784 tgcttccttacttgttttgtgtttccattaaaaactctttgatctgatccatttttagagtggagtgttaataagtctatgaacgacaacaagattgtgc 38028685  T
Q  337 agatattgaaactttttgttgtgctactcttagatagcatcaccatttttccctcaccttgatgtctctgctc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  38028684 agatattgaaactttttgttgtgctactcttagatagcatcactatttttccctcaccttgatgcctctgctc 38028612  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 38028917 - 38028754
Alignment:
Q  21 tttgccaatcaattgtgatcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaagacagtggtggtatgcggtggaatcttagtgat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  38028917 tttgccaatcaattgtgatcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaagacggtggtggtatgcggtagaatcttagtgat 38028818  T
Q  121 tggctgcttgcgatggcatcgttttgagatcattggttccttagttgttttgtgtttccattaa 184  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  38028817 tggctgcttgcgatggcatcgttttgagatcaatgcttccttacttgttttgtgtttccattaa 38028754  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 31574617 - 31574566
Alignment:
Q  40 caaatgctttgttttgaacatggttagataaagatgagaaaaacagaagaca 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31574617 caaatgctttgttttgaacatggttagataaagatgagaaaaacagaagaca 31574566  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 31574564 - 31574520
Alignment:
Q  108 gaatcttagtgattggctgcttgcgatggcatcgttttgagatca 152  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  31574564 gaatcttagtgattggctgcttgctatggcatcaatttgagatca 31574520  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 15150837 - 15150883
Alignment:
Q  190 tagttttcactttccgttatttgttattgcttaattttaatcttaat 236  Q
    |||||||||||||| |||||||||||||||   ||||||||||||||    
T  15150837 tagttttcactttctgttatttgttattgcaatattttaatcttaat 15150883  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 6509376 - 6509332
Alignment:
Q  108 gaatcttagtgattggctgcttgcgatggcatcgttttgagatca 152  Q
    |||||||||||||||||||||||  ||||||||  ||||||||||    
T  6509376 gaatcttagtgattggctgcttgttatggcatcaatttgagatca 6509332  T

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