View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17969_low_6 (Length: 405)
Name: NF17969_low_6
Description: NF17969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17969_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 386
Target Start/End: Complemental strand, 11859897 - 11859513
Alignment:
| Q |
14 |
aggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatc |
113 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
11859897 |
aggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagttgaatcaatctctctgcatcaatc |
11859798 |
T |
|
| Q |
114 |
aaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaaaattgtcgtaatagataaacttaagcatttccattgcttctg |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||| | |
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| T |
11859797 |
aaataatcttctggaaacaatgaacaatatgcgaagcataacttctgataagtgggaaggttgtcgtaatagataaacttaagcgtttctaatgctttcg |
11859698 |
T |
|
| Q |
214 |
gaatccagttgtca------ccaccaccaccactttgcttcatcatcaacgtcgctacgatcacaatcaaaagaggaactccaccacaaccctccacgat |
307 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
11859697 |
gaatccagttgtcaccacgaccaccaccaccactttgcttcttcattaccatcgctacgatcacaatcaaaagaggaactccagcacaaccttccacaat |
11859598 |
T |
|
| Q |
308 |
ctcccgttcatgttca------ggttcaatggtgctttgttcttttttggctgaagtaattggtccatgaatctgctgaaacaat |
386 |
Q |
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|||||||||| ||||| |||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11859597 |
ctcccgttcaggttcacgttcgggttcagtggtgctttgcacttttttggttgaagtaattggtccatgaatctgctgaaacaat |
11859513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 11827762 - 11827481
Alignment:
| Q |
14 |
aggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatc |
113 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
11827762 |
aggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcaccagtccagagttgaatcaatctctctgcatcaatc |
11827663 |
T |
|
| Q |
114 |
aaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaaaattgtcgtaatagataaacttaagcatttccattgcttctg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||| ||| | | |||| | |||||| |
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| T |
11827662 |
aaataatcttctggaaacaatgaacaatatgcaaagcataatttctgataagtgggaagatcgtcgtaatagataagcttcaccttttctagtgcttccc |
11827563 |
T |
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| Q |
214 |
gaatccagttgtcaccaccaccaccactttgcttcatcatcaacgtcgctacgatcacaatcaaaagaggaactccaccaca |
295 |
Q |
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||||||| | ||||||||| ||||||| |||||| |||||| | | || |||||||| |||||||| || || |||||||| |
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| T |
11827562 |
gaatccattcttcaccaccaacaccactatgcttcgtcatcacctttgcaacgatcactatcaaaagggggaccccaccaca |
11827481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 12038604 - 12038482
Alignment:
| Q |
66 |
agaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataag |
165 |
Q |
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||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
12038604 |
agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacg |
12038505 |
T |
|
| Q |
166 |
tgggaaaattgtcgtaatagata |
188 |
Q |
| |
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|||||| || |||||||||||| |
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| T |
12038504 |
tgggaagatcttcgtaatagata |
12038482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 11902628 - 11902770
Alignment:
| Q |
15 |
ggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatca |
114 |
Q |
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||||| ||||| | |||||||| | ||| ||||||||||| ||| || ||||| ||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
11902628 |
ggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatca |
11902727 |
T |
|
| Q |
115 |
aataatcttctggaaacaatgaacaatatgcaaagcataactt |
157 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||| |
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| T |
11902728 |
aataatctcttggaaacaatgaacaatatgcaaaacataactt |
11902770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 11731508 - 11731429
Alignment:
| Q |
72 |
ccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagca |
151 |
Q |
| |
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||||||||| ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||| |
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| T |
11731508 |
ccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagca |
11731429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 386
Target Start/End: Complemental strand, 11827434 - 11827372
Alignment:
| Q |
324 |
ggttcaatggtgctttgttcttttttggctgaagtaattggtccatgaatctgctgaaacaat |
386 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
11827434 |
ggttcgatggtgctttgtgcttttttggttgaagtaattggtccataaatctgctgaaacaat |
11827372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 11974974 - 11975068
Alignment:
| Q |
67 |
gaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctga |
161 |
Q |
| |
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|||| ||||| || ||| |||| |||||||||||||| |||||||||||| ||||| ||||||||||||||| || |||| || ||||||||| |
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| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctga |
11975068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 11902866 - 11902943
Alignment:
| Q |
229 |
caccaccaccactttgcttcatcatcaacgtcgctacgatcacaatcaaaagaggaactccaccacaaccctccacga |
306 |
Q |
| |
|
|||||||| ||||||| ||| |||||||| | |||||| |||||||| |||||| |||||||||||| ||| ||||| |
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| T |
11902866 |
caccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcacga |
11902943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 12038671 - 12038627
Alignment:
| Q |
14 |
aggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgg |
58 |
Q |
| |
|
|||||| ||||| | |||||||||| ||||||||||||||||||| |
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|
| T |
12038671 |
aggaacaaagtcgttgaaacaagctcgaccaaattgttgttctgg |
12038627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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