View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17969_low_7 (Length: 372)
Name: NF17969_low_7
Description: NF17969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17969_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 57 - 341
Target Start/End: Original strand, 33612231 - 33612515
Alignment:
| Q |
57 |
acagccaaaagaagaagcaacgaccaaacacacaaaccaatagagagatgaacaacctaaaaagaagcagcaaccatatgaaacaatcacacataaaaat |
156 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33612231 |
acagccaatagaagaagcaacgaccaaacacacaaacaaatagagagatgaacaacctaaaaacaagcagcaaccatatgaaacaatcacacataaaaat |
33612330 |
T |
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| Q |
157 |
ggtttccatagattgaacatgagtgaacaaactgtggatcgttccattttttgcttttcagatcccttattgcaatttaaatcaacttgaattggattgt |
256 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33612331 |
ggtttccatggattgaacatgagtgaacaaactgtggatcgttccattttttgcttttcagatcccttattgcaatttaaatcaacttgaattggattgt |
33612430 |
T |
|
| Q |
257 |
ttataaagatcctaattgatataaatgttttatataaatctaataaataaataattttccctacgtattgttttgcacaggttct |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33612431 |
ttataaagatcctaattgatataaatgttttatataaatctattaaataaataattttccctacgtattgttttgcacaagttct |
33612515 |
T |
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