View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_high_15 (Length: 234)
Name: NF1796_high_15
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 22462065 - 22462245
Alignment:
| Q |
1 |
ttaatgtctataatatattatacatatgtctttcatgtttaaaagtagaaactgccactaacttatcaagtaacttggcatccttaattttctctt-aga |
99 |
Q |
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|||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |
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| T |
22462065 |
ttaacgtctataatatattatacacatgcctttcatgtttaaaagcagaaactgccactaactcatcaagtaacttgtcatccttaattttctcttcaga |
22462164 |
T |
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| Q |
100 |
caaaatggtcatgactatatattcttgcagtcaataatacaagatacatgaaaagaaaatacacgtatacctcacaaagaaaa |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22462165 |
taaaatggtcatgactatatattcttgcagtcaataatacaagatacatgaaaagaaaatacac--atacctcacaaagaaaa |
22462245 |
T |
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Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 17365097 - 17364926
Alignment:
| Q |
1 |
ttaatgtctataatatattatacatatgtctttcatgtttaaaagtagaaactgccactaacttatcaagtaacttggcatccttaattttctctt-aga |
99 |
Q |
| |
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||||||| ||||||||||||| || |||||||||||| |||||||||| ||||||||| |||| |||||||||| | |||||||||||||||| ||| |
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| T |
17365097 |
ttaatgtttataatatattatgcacatgtctttcatgcttaaaagtaggaactgccacgaactaatcaagtaacgcgttgtccttaattttctcttcaga |
17364998 |
T |
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| Q |
100 |
caaaatggtcatgactatatattcttgcagtcaataatacaagatacatgaaaagaaaatacacgtatacct |
171 |
Q |
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||||||||||| ||||||||||||||| ||| ||| ||||||||||| ||||||||||||| |||||||| |
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| T |
17364997 |
aaaaatggtcatagctatatattcttgcaatcagtaacacaagatacataaaaagaaaatacatgtatacct |
17364926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 3640611 - 3640748
Alignment:
| Q |
30 |
ctttcatgtttaaaagtagaaactgccactaacttatcaagtaacttggcatccttaattttctcttagacaaa-atggtcatgactatatattcttgca |
128 |
Q |
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|||||||| |||||||||||||||| | |||| | |||||||||| || |||||||| ||||||||| | ||| | | |||||||| |||||||||||| |
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| T |
3640611 |
ctttcatgcttaaaagtagaaactgtccctaattcatcaagtaacatgtcatccttatttttctctttggaaaatacgttcatgactgtatattcttgca |
3640710 |
T |
|
| Q |
129 |
gtcaataatacaagatacatgaaaagaaaatacacgta |
166 |
Q |
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| T |
3640711 |
atcggtaacacaagatacataacatgaaaatacacgta |
3640748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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