View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_high_8 (Length: 335)
Name: NF1796_high_8
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 30652783 - 30652586
Alignment:
| Q |
9 |
caaaaatatctcaacaaaaagagtagatctgtgttgtgagttgtgattaaacaaaaggatatgaaacgtgatggagaaattttagaagtggtgctgggtg |
108 |
Q |
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| T |
30652783 |
caaaaatatctcaacaaaaagagtagagctgtgttgtgaggtgtgattaaacaaaaggatatgaaacgtgatggagaaattttagaagtggtgctgggtg |
30652684 |
T |
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| Q |
109 |
gaaaacaatcaaagggctcctagtctctttagcaaaacggttatcaaacacataatgcacaaaatggctaaaaagaaggaaacaaatgacaaccacgt |
206 |
Q |
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| T |
30652683 |
gaaaacaatcaaagggcttctagtctctttagcaaaacggttatcaaacacataatgcacaaaatggctaaaaagaaggaaacaaatgacaaccacgt |
30652586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 30652524 - 30652453
Alignment:
| Q |
264 |
cctcatcaaagagctaagtacaaacggttacacatttccaaaatcaaaatgactacttccttgcttttcttc |
335 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
30652524 |
cctcatcaaagagctaagcacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttc |
30652453 |
T |
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