View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_low_1 (Length: 685)
Name: NF1796_low_1
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 16 - 673
Target Start/End: Complemental strand, 29240761 - 29240117
Alignment:
| Q |
16 |
aaattagaatccacctatctatctatctagtaagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatag |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240761 |
aaattagaatccacctatctatcta----gtaagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatag |
29240666 |
T |
|
| Q |
116 |
aactctaaaattgaaatnnnnnnnngtaataattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagtaaa |
215 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29240665 |
aactctaaaattgaaataaaaaaa-gtaataattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagcaaa |
29240567 |
T |
|
| Q |
216 |
acgagaaacaaaattcaacatcagattgtgtggacttacaaaaatacggcaattcatagtttgacagtaaacatttaaagattgaaaactacagattgtt |
315 |
Q |
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||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240566 |
acgagaaacggaattcaacatcagattgtgtggacatccaaaaatacggcaattcatagtttgacagtaaacatttaaagattgaaaactacagattgtt |
29240467 |
T |
|
| Q |
316 |
agagaatagagaatataaagatatgtaccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgtgttgttga |
415 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29240466 |
agagaatagagaatataaagatatgtatcactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgtattgttga |
29240367 |
T |
|
| Q |
416 |
tacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacataatgcgaaagattattttccaca |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
29240366 |
tacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacatagtgcaaaagattattttccaca |
29240267 |
T |
|
| Q |
516 |
acttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcctgaatgaattgtttataggacatcaacccttctctaaaagaggt |
615 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240266 |
acttacctatgttctgcttcagttggtagcat--------atcatcctcaagctcctgaatgaattgtttataggacatcaacccttctctaaaagaggt |
29240175 |
T |
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| Q |
616 |
cataattatactaatgttaacatgtagttccagaaagatcaattatcagacagaagta |
673 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
29240174 |
cataattatactaatgttaacatgtagttccagaaagatcgattatcagaaagaagta |
29240117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 673
Target Start/End: Complemental strand, 16828303 - 16827653
Alignment:
| Q |
16 |
aaattagaatccacctatctatctatctagtaagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatag |
115 |
Q |
| |
|
|||||||||||||||||| |||| | ||||| ||||| || |||||||||||||||| |||||||||| |||||||| |||||||| |||||||||| |
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| T |
16828303 |
aaattagaatccacctatttatcga----gtaagcaccccccataaaaataaaaatgatccattaagattaacaggacaacacgttatgtttttcaatag |
16828208 |
T |
|
| Q |
116 |
aactctaaaattgaaatnnnnnnnng-----taataattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaa |
210 |
Q |
| |
|
|||| ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16828207 |
aactgtaaaattgatataaaaaaaataataataagaattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaa |
16828108 |
T |
|
| Q |
211 |
gtaaaacgagaaacaaaattcaacatcagattgtgtggacttacaaaaatacggcaattcatagtttgacagtaaacatttaaagattgaaaactacaga |
310 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
16828107 |
gtaaaacgagaaagggaaatcaacatcagattgtgtggacttacaaaaatatggcaattcatagttttacaggaaacatttaaagattgaaaactacaga |
16828008 |
T |
|
| Q |
311 |
ttgttagagaatagagaatataaagatatgtaccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgtgtt |
410 |
Q |
| |
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|||| | || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16828007 |
ctgttttataacagagaatataaagatacgtaccactcctcatccttatgagcactgaaataagctcttttttgtgtagaaatatactctgatttgtatt |
16827908 |
T |
|
| Q |
411 |
gttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacataatgcgaaagattatttt |
510 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
16827907 |
cttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcaaactctcagacataatgcaaaagattatttt |
16827808 |
T |
|
| Q |
511 |
ccacaacttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcctgaatgaattgtttataggacatcaacccttctctaaaa |
610 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16827807 |
ccacaacttacctacgttctgcttcagttggtag--------tatatcatcctccagctcctgaatgaattgtttataggacatcaacccttctctaaaa |
16827716 |
T |
|
| Q |
611 |
gaggtcataattatactaatgttaacatgtagttccagaaagatcaattatcagacagaagta |
673 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16827715 |
caggtcataattatactaatgttaacatgtagttccagaaagatcaattatcagacagaagta |
16827653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 846375 - 846427
Alignment:
| Q |
150 |
acctttcaatgactgtaagcaaatttgttggatgatatttatctttcaaccta |
202 |
Q |
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|||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
846375 |
acctttcaattactgtaagtaaatttgttggatgatacttatctttcaaccta |
846427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 606
Target Start/End: Original strand, 846769 - 846822
Alignment:
| Q |
553 |
tatatcatcctcaagctcctgaatgaattgtttataggacatcaacccttctct |
606 |
Q |
| |
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||||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |
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| T |
846769 |
tatatcatcttcaagctcctggatgaattgcttataggacatcaaaccctctct |
846822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 428
Target Start/End: Original strand, 846564 - 846651
Alignment:
| Q |
341 |
taccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgtgttgttgatacctagaaaaat |
428 |
Q |
| |
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|||||||| ||||||| || | |||||||||||||| |||||| |||| |||||||||||| |||| | ||| || |||||||||| |
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| T |
846564 |
taccactcagcatccttgtgggtattgaaataagctcgtttttgggtagtaatatactctgacttgtactcttggtatctagaaaaat |
846651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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