View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_low_10 (Length: 373)
Name: NF1796_low_10
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 54099776 - 54100121
Alignment:
| Q |
18 |
aagaattgtgttaactannnnnnngatatctttctgtacgcaattttaaattaaaattatattccacctgcacattctctattagtctggttaagtaaag |
117 |
Q |
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| T |
54099776 |
aagaattgtgttaactatttttttgatatctttctgtacgcaattttaatttaatattatattccacctgcacattctctattagtctggttaagtaaag |
54099875 |
T |
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| Q |
118 |
tttgattcatttgagtagaacaggatacaaaaccgcaaaactctattcgactataaaatgtttaaaatatgactgaacttactgtcatcggttaaagaaa |
217 |
Q |
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| T |
54099876 |
tttgattcatttgagtagaacaggatacaaaaccgcaaaactctattcgactataaaatgtttaaaatatgactgaacttactgccatcggttaaagaaa |
54099975 |
T |
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| Q |
218 |
agtttcaccctcatttaagtctaatatgttggtttgaatccacacccttccaaccttcagtactagggttgaacctgcgttgagaaagcatatgtgatat |
317 |
Q |
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| T |
54099976 |
agtttcaccctcatttatgtctaatatgttggtttgaacccacacccttccaaccttcagtactagggttgaacctgcgttgagaaagcatacgtgatat |
54100075 |
T |
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| Q |
318 |
ccttgatttaaatttgaaattggatcctaaccttcctacccctttg |
363 |
Q |
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| T |
54100076 |
ccttgatttgaatttggaattggatcctacccttcctacccctttg |
54100121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 221 - 346
Target Start/End: Original strand, 54100833 - 54100959
Alignment:
| Q |
221 |
ttcaccctcatttaagtctaatatgttggtttgaatccacacccttccaaccttc-agtactagggttgaacctgcgttgagaaagcatatgtgatatcc |
319 |
Q |
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| T |
54100833 |
ttcaccctcatttatgtctaacatgttggtttgaacccacacccttccaaccttctagtactagggttgaacatgcgttgagaaagcatacgtgatatcc |
54100932 |
T |
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| Q |
320 |
ttgatttaaatttgaaattggatccta |
346 |
Q |
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| T |
54100933 |
ttggtttgaatttggaattggatccta |
54100959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 221 - 346
Target Start/End: Original strand, 54100410 - 54100536
Alignment:
| Q |
221 |
ttcaccctcatttaagtctaatatgttggtttgaatccacacccttccaaccttc-agtactagggttgaacctgcgttgagaaagcatatgtgatatcc |
319 |
Q |
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|||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
54100410 |
ttcaccctcatttatgtctaacatgttggtttgaacccacacccttccaaccttctagtactatggttgaacatgcgttgagaaagcatacatgatatcc |
54100509 |
T |
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| Q |
320 |
ttgatttaaatttgaaattggatccta |
346 |
Q |
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||| ||| |||||| |||||||||||| |
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| T |
54100510 |
ttggtttgaatttggaattggatccta |
54100536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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