View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_low_11 (Length: 347)
Name: NF1796_low_11
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 2749314 - 2748995
Alignment:
| Q |
19 |
atataaaaaacgtaaattgcgtagctgaaatgattaacataatttgtgatggtctcaataaaagcattgatgatcaaaagtaattaaaattaataatgaa |
118 |
Q |
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| T |
2749314 |
atataagaaacgtaaattgcgtagctgaaatgattaacataatttgtgatggtctcaataaaagcattgatgatcaaaagtaattaaaattaataatgaa |
2749215 |
T |
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| Q |
119 |
tnnnnnnn-tggaaatattataattagtgcattattcgtcnnnnnnnnnt-------tagtgcatgattgattttctttgaggattattagtgcatgatt |
210 |
Q |
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| T |
2749214 |
taaaaaaaatggaaatattataattagtgcattattcgtcaaaaaaaataaaaaaaatagtgcatgattgattttctttgaggattattagtgcatgatt |
2749115 |
T |
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| Q |
211 |
gatgattatagttctaa-tctaaactttctattcttctgaaaacagaaacacaagaatattggtgtatgattgatacgctatctgtaacattattatcct |
309 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2749114 |
gatgattatagttctaaatctaaactttctattcttctgaaaacagaaacacaagaatattggtgtatgattgatacgctatctgtaacattattatcct |
2749015 |
T |
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| Q |
310 |
acgcgtaacaaattaaagtc |
329 |
Q |
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|||||||||||||||||||| |
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| T |
2749014 |
acgcgtaacaaattaaagtc |
2748995 |
T |
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