View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_low_13 (Length: 308)
Name: NF1796_low_13
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 166 - 287
Target Start/End: Complemental strand, 32940654 - 32940533
Alignment:
| Q |
166 |
aacaaatattatttatttcttacgaaacttgtaaagccaagatgtaatatttaattaataaccttattatagaactcaacatcgttgccaatgtgaagga |
265 |
Q |
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| T |
32940654 |
aacatatattatttatttcttacgaaacttgtaaagccaagatgtaatatttaattaataaccttattataaaactcaacatcgttgccaatgtgaagaa |
32940555 |
T |
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| Q |
266 |
gatttaagttctgatcaaaatg |
287 |
Q |
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| T |
32940554 |
gatctaagttctgatcaaaatg |
32940533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 32910514 - 32910453
Alignment:
| Q |
226 |
accttattatagaactcaacatcgttgccaatgtgaaggagatttaagttctgatcaaaatg |
287 |
Q |
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| T |
32910514 |
accttattaaaaaactcaacatctttgccaatatgaagaagatctaagttctgatcaaaatg |
32910453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 32921903 - 32921842
Alignment:
| Q |
226 |
accttattatagaactcaacatcgttgccaatgtgaaggagatttaagttctgatcaaaatg |
287 |
Q |
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| T |
32921903 |
accttattataaaactcaacatctttaccaacatgaagaagatttaagttttgatcaaaatg |
32921842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 32932354 - 32932305
Alignment:
| Q |
238 |
aactcaacatcgttgccaatgtgaaggagatttaagttctgatcaaaatg |
287 |
Q |
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||||||| ||| |||||||||||||| |||| ||||||||| |||||||| |
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| T |
32932354 |
aactcaatatcattgccaatgtgaagaagatctaagttctggtcaaaatg |
32932305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 11822423 - 11822362
Alignment:
| Q |
226 |
accttattatagaactcaacatcgttgccaatgtgaaggagatttaagttctgatcaaaatg |
287 |
Q |
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||||||||||| ||||||||||| || |||| ||||| ||||||||||| ||||||||||| |
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| T |
11822423 |
accttattataaaactcaacatctttaccaacatgaagaagatttaagttttgatcaaaatg |
11822362 |
T |
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